Candidatus Uabimicrobium helgolandensis: UABHE_000464
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Entry
UABHE_000464 CDS
T10824
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
uhl Candidatus Uabimicrobium helgolandensis
Pathway
uhl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
uhl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
UABHE_000464 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
uhl03021
]
UABHE_000464 (rpoB)
03400 DNA repair and recombination proteins [BR:
uhl03400
]
UABHE_000464 (rpoB)
Enzymes [BR:
uhl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
UABHE_000464 (rpoB)
Transcription machinery [BR:
uhl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
UABHE_000464 (rpoB)
DNA repair and recombination proteins [BR:
uhl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
UABHE_000464 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
XEY22751
LinkDB
All DBs
Position
complement(640661..644437)
Genome browser
AA seq
1258 aa
AA seq
DB search
MKVSPKKKHYGKYQEVIEVPNLIELQLRAYEDFLQMEAPFIDRDDKGLESIIRKVFPIKS
YDGKMSLEYLYYELGKPRYNPDECRKLKLTYGAPFTIRVRLNIEGREPIEDDVYLGEVPI
MIGGGEFIINGAERVIVSQLHRSPGIDFAEEKHSGEKHLQTCWIIPERGSWIEINVTKKE
TLVIRIDQSGKIPITIFIRAMGPEYSTDESIIKLFYETQTISLRSSKASKELGQRILASS
IQIKDAVEQDKVLQVPAGTSLTDDLIKKICDSDLKSVTVLKEKKNRIDNLILKTLEEDPT
SDLKRNKEKEPEGYVAALARIFARLRPGTPFNLERAKNLFFEKFHDPTRYRLGPVGRFRL
NRKFGQKVNPQEMVLTPEDIFNSVNYILKLRKNEGEVDDIDHLGNRRVRTIVELAGDEFY
KGFLKLNRTIKERMNIEAEETLSPKNLINSKTISSAVDYFFGRGELSQVVDQTNPLAQLT
HERRLSALGPGGLNRKRAGFEVRDVHISHYGRICPIETPEGTNIGLISSLAIYTTIDEYG
FLVSPYLVAKNGKVTQEIKYLRADEEHNKVIAPADIIDAKGNFYNRFVIARVNGDYQQLS
NKKVDYCDISPKQMVGVSASLIPFLEHNDANRALMGSNMQRQAVPLLVTEAPIVSTGMEK
AVAQNSSMVICSDIDGKIKSATAERIIVESKKEEIEYTLRKFVGLNERTCLNQKPIVRTG
DKVKKNQVIADGAATDNGQLALGRNVLVAFMPWDGYNFEDAIIVSEKLVKEDYYTSLHID
EFEAEIRETKLGKEEFTRDIPNVSERALLNLDDNGIVKVGTIVRQGDILVGKVAPKNKSE
LSPEEKLLHAIFGRAGEDVKNDSLEVPSGVEGIVIHTQKFARKLKPKDASEASKNKAELD
EIEQLHLETFENTLRSLSDELAKIFGENVLAEKIAWPKNPSLKSLKDVKEKLNINRLKLS
SREKRVEAAQIIKKHMDIIMESEDQKNKKSTLLQSGDELPPGVLELVKVYIATKRILSVG
DKMAGRHGNKGVISKILPEEDMPFLEDGTPVEIILNPLGVPSRMNVGQILETHLGWAAKK
LNFQAITPVFDGCSEKQVEEALEEAKLPNNGTCYLYDGRTGERFEQKTTVGYIYMMKLHH
LVDDKVHARATGPYSLITQQPLGGKARFGGQRFGEMEVWALEAYGVANILQELLTVKSDD
VEGRTKIYESMVKGENTLEPGTPISFEVLTNEIKGLALDMQLHKKKVSKQIPGKNTTS
NT seq
3777 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtttctccgaaaaaaaaacattatggcaagtaccaagaagttatcgaggttccg
aatctaatagaactacaacttcgagcatacgaagactttttacaaatggaagcccctttt
attgatcgcgatgacaaagggttagaatctattattcgtaaagtttttcctataaaaagt
tacgacggaaaaatgtctttagagtacttgtactacgaactaggaaaaccgcgctacaat
cctgatgaatgccgtaaactaaaactaacttacggagcccccttcacaatacgtgttcga
cttaatatcgaaggacgtgaacctatcgaagacgatgtttatctaggtgaagttcctatt
atgattggtggtggagaattcattattaacggtgcagagcgtgtcattgttagtcaatta
cacagatctccaggtattgatttcgctgaagaaaaacactcaggtgaaaaacacttgcaa
acttgttggattatacctgaacggggtagttggattgaaatcaatgtaaccaaaaaagaa
actcttgtaatacgcatcgatcaaagtgggaaaatccccattacgatattcattcgagca
atggggccagaatattctacagatgaatctatcattaaacttttctatgaaacacaaacg
atctcgcttagaagtagtaaagcatctaaagaacttggccaaagaattttagcttcttcg
atacaaataaaagacgctgtcgaacaagataaagtacttcaagttcctgctgggacttct
ttaacagacgaccttataaagaaaatatgcgatagtgatttgaaatcagtaactgtcctt
aaagaaaagaaaaatcgtatagataatcttattttaaaaactcttgaagaagatccaact
agtgatcttaaacgcaacaaagaaaaagaaccagaaggatatgttgctgctttggcacgt
atttttgctcgtttgcgcccaggaacgccttttaatttagaaagagcaaaaaacctattc
tttgaaaaatttcacgatccaacacgctacagattaggtcctgtcggacgttttcgctta
aatcgtaagtttggtcaaaaagtaaatcctcaagaaatggttttaactccagaagacatt
tttaattctgtaaattacatcttgaagctgcgaaaaaatgaaggtgaagtggatgacatt
gatcacttaggaaatcgtcgtgtacgtacaatcgttgaattggctggagacgagttctac
aaagggtttctaaaattgaatcgtacaattaaagaacgtatgaacatagaagccgaagaa
acactatcaccaaaaaatttaataaactcgaaaaccatttcatctgcggtagattacttt
tttggtagaggtgaactttcgcaagtagtagaccaaacaaatcctttagcgcaattgaca
catgaaagacgtttgtcagcacttgggcctggtggacttaatagaaaaagagcgggattt
gaagtacgtgatgtacatatttcgcactacggacgtatttgtcctattgagacacctgaa
ggtacaaatattggtttgatttctagtttagcgatctatacaactatcgatgaatacggc
tttttagtttctccgtatcttgtggcaaaaaacggtaaagttacccaagaaattaagtat
ctccgcgcagatgaagagcacaacaaagtaattgcacctgctgatatcattgatgctaaa
ggaaatttttataatcgttttgttattgcacgtgtaaacggtgattaccaacagttatca
aacaaaaaggtagattactgtgatatatcgccaaaacaaatggtcggggtatctgcgtct
ttaattcctttcttagagcataatgacgctaaccgcgctctgatgggatcaaacatgcag
aggcaagctgttcctttgcttgtaacagaagcacctattgtttctacgggaatggaaaaa
gctgttgctcaaaactctagtatggttatttgtagtgatatagatggtaaaataaaatct
gctaccgccgagcgcataattgttgaaagtaaaaaagaagaaatagaatacactttacgc
aaatttgttggactcaacgaaagaacttgtctcaatcaaaaaccaattgttcgtacagga
gacaaggtcaagaaaaatcaagttattgctgatggtgcagctacagataatggtcaacta
gccttaggaagaaatgttcttgtagcgtttatgccttgggatggatataactttgaagat
gcaatcattgtttctgaaaaattagtaaaagaagattactatacctctcttcacatagat
gaatttgaggcagaaatacgcgaaacaaaactaggaaaagaagagtttacaagagacata
ccaaatgtttcagaaagagctctccttaatctcgatgataatggtatcgtaaaagtagga
acaatagttcgccaaggggatatcttagtaggtaaggttgctccaaaaaataaatctgaa
ttgtctccagaagaaaaactattgcacgcgatttttggtcgcgctggtgaggatgtaaaa
aacgatagtcttgaagtaccttcaggtgttgaaggcattgttatacatactcaaaaattt
gctcgcaaattaaaacccaaagatgcatctgaagcttccaaaaataaagcagaattagat
gaaattgaacaacttcatttagaaacttttgaaaatactctaagaagtttatcagacgag
ttagcaaaaattttcggtgaaaatgttttagcggaaaaaatagcgtggccaaaaaatcca
agccttaaaagcttaaaagatgtaaaagaaaaactgaatataaaccgcttaaaattatct
agtcgtgaaaaacgagtagaagcagcgcaaataatcaaaaaacacatggacatcataatg
gagtcagaagaccagaaaaataagaaaagtaccttattacaatctggtgatgaacttcct
ccaggtgttctagaacttgttaaagtatatatcgctaccaagcgtattttatctgtaggt
gataaaatggctggtcgccacggaaacaaaggggtaatatcaaaaatattgccagaagaa
gacatgccgtttcttgaagacggaactcccgtcgaaattatactaaatcctctgggcgta
ccttcgcgtatgaacgttggacaaatattagaaacacacttagggtgggcagctaaaaag
ctaaattttcaagcaataacacctgtttttgatggttgttctgaaaaacaagtggaagaa
gctcttgaagaagctaagttaccaaacaatggtacatgttatctttatgatggtcgaaca
ggtgaacgatttgaacaaaaaacaacggtaggttatatctatatgatgaaactacaccac
cttgttgacgataaagttcacgcgcgagcaacaggtccatactctctcataacacagcaa
cctctaggaggtaaagcgcgttttggtggacagcgttttggagaaatggaagtatgggca
ctcgaagcttacggtgttgcgaatatcttacaagaattgttaactgtaaaatctgacgat
gtagaggggcgtactaagatttatgaatcgatggtaaaaggtgaaaatactcttgaacca
ggaactccaatttcctttgaagttcttaccaacgaaatcaaaggtcttgctcttgatatg
caactacataaaaaaaaagtaagtaaacagattcctggaaaaaacacaacaagttaa
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