Candidatus Uabimicrobium helgolandensis: UABHE_002253
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Entry
UABHE_002253 CDS
T10824
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
uhl Candidatus Uabimicrobium helgolandensis
Pathway
uhl03420
Nucleotide excision repair
uhl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
uhl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
UABHE_002253
03430 Mismatch repair
UABHE_002253
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
uhl03400
]
UABHE_002253
Enzymes [BR:
uhl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
UABHE_002253
DNA repair and recombination proteins [BR:
uhl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
UABHE_002253
MMR (mismatch excision repair)
Other MMR factors
UABHE_002253
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
ResIII
DEAD
AAA_11
AAA_14
AAA_22
Post_transc_reg
PcrA_UvrD_tudor
cobW
Motif
Other DBs
NCBI-ProteinID:
XEY24476
LinkDB
All DBs
Position
3115625..3117532
Genome browser
AA seq
635 aa
AA seq
DB search
MKTLNDEQKYAISLNENTILVKSAVGSGKTTVLAHKIEQLCATCDPQNIIVLTFTRRAAR
EINKRLSHTNSQIEKTPCCGTFHSVANRLLRDYFDITALGFDRHFSIIEDRQRCEILEEL
CFDLNIRISKRELRSFTGNSDSPKKKQLAEEYQAYKKRTNILDFDDLMIYLNEILSLQKS
LFSWIIVDEFQDCDAIQSQILQKFISHGAHLFAVGDPYQTIYHWRGSDPIIFDNFAKLPN
CITTELSLNYRSNANIINAAKELFSPHNQVRAHRSPSALVEVKKHHNAFHEATHLAFSIK
ALATESINYNEIAILYRRQVQKDTIIKVFQEHNIPFTVQRQVQIHSIPVLDWLYNLFILC
LNKKNLFAKRMVFSHKKYGAKKQKRDFLKDKIANFSQFAKKGISSQQIWDYFTMEKFLLP
TNASFDKDQKFVMTFLEEILPEISRQDFYDSLQNNILCRDFNLEAIVDIVDGCCTDGVQL
MTIHSSKGLEFSHVFIVGANAGNIPLQRQNSDEEKRLFYVAITRAKEYVEISYTNTAELY
GTTADPSPYLLELNTSAVHWPKEQLEQVDLKELAHQLKDQTIKSSDQRRASHEKYGTGII
VSEDQDSIVVDFPGYGEKSFSKVFCPLKIEANDES
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacgctaaatgatgaacaaaaatacgcgatctctctaaacgaaaacactatttta
gtaaaatctgctgttggcagtggaaaaacaacggtgttagcgcataaaattgaacaactg
tgcgcgacgtgtgatcctcagaatattattgttcttacctttactcgtagggctgcacgc
gaaattaataaacggttatcacacactaattcgcaaatagaaaaaacaccttgttgtggt
acttttcacagcgttgccaatcgattacttcgagattattttgatataactgctttagga
tttgatcgacatttttcaatcatagaagatagacaacgatgcgaaatcttagaagaattg
tgcttcgatctcaacatacgtattagcaaaagagaactacgtagcttcacaggtaacagt
gatagtcccaaaaaaaaacaactcgcggaggagtaccaagcgtataaaaaacgcacaaat
atactagacttcgatgatttgatgatatatttaaatgaaatattatctttgcagaaatcg
ctattttcttggattatcgtagatgaatttcaagattgcgatgcgattcaatcgcaaata
ctacaaaaatttatttctcatggagcacatctttttgccgtaggcgacccttaccaaact
atatatcactggcgaggtagtgacccaattatttttgataattttgcaaagttaccaaac
tgcattactaccgagttatctctgaactatcgttctaatgccaatataataaacgctgct
aaagagttattttctcctcacaatcaagttcgcgcacatcgttctcctagtgcacttgtt
gaagttaaaaagcatcataatgcgtttcacgaagccactcatttagccttttccataaaa
gctttagcaacggaaagtattaattacaatgagatagctattctatatcgtcgccaagtt
cagaaagatacgattataaaagtttttcaagagcacaatatcccttttaccgtacaacga
caagtgcaaatacactctattcccgttctcgattggctttataatttatttattctttgt
ttaaacaaaaaaaacttattcgccaaacgcatggtattttcacataaaaaatacggagcg
aaaaagcaaaaacgagatttccttaaagataaaatcgctaattttagtcaatttgctaaa
aaaggtattagttctcaacaaatatgggactattttaccatggagaaatttttattgccg
acaaacgcttctttcgataaagatcaaaaatttgtaatgacttttcttgaggaaattttg
ccagagatttctcgccaagatttttacgactctttacaaaacaatatattgtgccgcgat
ttcaatcttgaggcgattgttgatattgtcgatggttgttgcacagatggtgttcaattg
atgacaatacacagctctaaaggactagaattttctcatgtgttcattgttggtgctaat
gctgggaatattcccttacaaaggcaaaatagcgacgaagaaaaacgtttattttatgta
gcaataacacgtgccaaggaatacgtagaaatttcttatacaaataccgcggaattatac
ggaacgactgctgatccatctccctacttattagaattaaataccagtgctgtacactgg
cctaaagaacagttagagcaagtcgatttaaaagagctagctcatcaattaaaagaccaa
acaataaaaagctcagatcaacgtcgtgcttctcatgaaaaatatggaacaggtattatt
gtcagcgaagatcaggattcgattgtcgttgatttccctggctatggagaaaagtcattt
tctaaagttttttgccctttgaaaatagaggcaaatgatgaaagctaa
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