Candidatus Uabimicrobium helgolandensis: UABHE_002296
Help
Entry
UABHE_002296 CDS
T10824
Symbol
truB
Name
(GenBank) tRNA pseudouridine(55) synthase TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
uhl Candidatus Uabimicrobium helgolandensis
Brite
KEGG Orthology (KO) [BR:
uhl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
uhl03016
]
UABHE_002296 (truB)
Enzymes [BR:
uhl01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
UABHE_002296 (truB)
Transfer RNA biogenesis [BR:
uhl03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
UABHE_002296 (truB)
Prokaryotic type
UABHE_002296 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Motif
Other DBs
NCBI-ProteinID:
XEY24515
LinkDB
All DBs
Position
complement(3176835..3177713)
Genome browser
AA seq
292 aa
AA seq
DB search
MNIVTSGLLLIDKPLGDTSRQALFSVQKIINSGRLGHTGTLDPLATGLLVLLCGQARKLQ
NILTLDNKEYDVTVSLGAVSETDDSEGPIHTNDDAVAPGLEEVKEMIGKFTGEIDQVPPR
YSAIKIKGKRAYKSAREGEIIAIPSRKVRIDKIDLIDYNYPSLTLKVKCGSGTYIRSLAR
DIGEGLGVGGYVRKLRRTQVGDFRIEDSSTINEISIQSMLRLEDVAVRYQRIDLNNEYLI
RICNGQKIAQPQILEKDFRFPTFLWIDNRVIAIAKISDGVVSSRKLLIDNTF
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
atgaatattgtaacatcaggccttcttttgattgataaaccactaggtgatacttcacgc
caggccttatttagtgtacaaaaaataataaatagtggacgtttaggtcatacaggaact
ttggatcctttagctacaggattacttgttttactttgtggtcaagcacgtaagctacaa
aacatacttactcttgacaataaagaatatgatgtaactgtctctctcggagcagtatca
gaaacagatgatagtgaaggccctattcacactaatgatgatgctgtagcgcctggacta
gaagaagtaaaagaaatgataggtaaatttaccggagagattgaccaagttccgccacgc
tatagtgccattaaaataaaaggaaaacgtgcatataaaagtgccagagaaggtgaaata
attgcaataccttcgcgaaaagtacgtatagataaaatcgatctcattgactacaattat
ccttcactaactttaaaagtaaaatgtggttctggaacatacatacgctctctagcgcgc
gatattggcgaagggttgggggtcggaggatatgttagaaaattacgtcgtacgcaagtt
ggggatttcagaatagaagattcatcgacaattaatgaaatttccatacagtcgatgttg
cggttggaagatgtggctgttcgctaccaacgtattgatttaaataatgaatacttaatt
agaatatgcaatggccaaaaaattgcgcagcctcaaattctcgaaaaagattttcgtttc
cctacttttttatggattgacaatcgtgtgattgctattgcaaaaattagtgatggtgtt
gtttcttcgcgtaagcttcttattgacaacacgttttaa
DBGET
integrated database retrieval system
