Candidatus Uabimicrobium helgolandensis: UABHE_002471
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Entry
UABHE_002471 CDS
T10824
Name
(GenBank) HD domain-containing protein
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
uhl Candidatus Uabimicrobium helgolandensis
Pathway
uhl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
uhl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UABHE_002471
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
uhl03019
]
UABHE_002471
Messenger RNA biogenesis [BR:
uhl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
UABHE_002471
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
RNase_Y_N
HDOD
Zw10_N
Spore_YhcN_YlaJ
DUF4094
Motif
Other DBs
NCBI-ProteinID:
XEY24688
LinkDB
All DBs
Position
complement(3386841..3388355)
Genome browser
AA seq
504 aa
AA seq
DB search
MILLLFLSSILGYIVSWLLYKRQQSYSQQIKTKIESICAKKIAKKKNIGEEKTKSIIKEY
EHLKKVVSEKYQQNIQSLREQITYQEMELKNREEYLNLKEQLFFDKKSRVQNKIDTFNYL
NDKLSDICKEHKKALLKVKKYDIAKIKKYILQNTQRELHGEKQILLNRFADDISMYSEEI
VKRLLSSIVQRSVFSHWNDSYPNSLLINDKKTKSFLKDNEHILNELLGVSLQFKDSIVII
NESDGYCREIARKVLLDTIQYTIDNSEDLYSCIIQKCEHYKQKTIEFVLKKCEEIDLLDF
SKSLAWHMGKLKYRTSFGQNILAHSYEVAMLAWRIAGELGFSQSLSKRGAFLHDIGKAVD
HKEAGGHSSLGEQILKDENEASQVIEGIVEHHEDASPEKPYAAIVSISDAISAARPGARR
ETFEKYTKKLQKIESLTKNIKGIRDAYAVSAGREIRVIVQPDIINDHDAQKIAKELAISI
GKEILYSGVVRVTVIREKTFEVYT
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgattttgttactattcttaagttcaattctaggttatatagtttcttggcttttatac
aaacgtcagcaatcatattctcaacagataaaaacgaagattgagagtatttgcgcaaaa
aagatagcaaagaaaaagaatatcggcgaagaaaaaacaaaatcaattataaaagaatat
gaacatttgaaaaaagttgtttctgaaaaataccagcaaaatattcaatctttacgagaa
caaattacttaccaagagatggaattaaaaaatcgcgaagagtatttaaatcttaaagag
caactatttttcgacaaaaaatccagagttcaaaataaaatagatacttttaattattta
aatgataaattatcagatatctgtaaagaacacaaaaaagcattactcaaagtaaaaaaa
tatgatattgctaaaataaaaaaatatatattacaaaacactcagcgagaacttcacgga
gaaaagcaaattttattgaaccgctttgctgatgacataagtatgtattcagaagaaatt
gtaaaacgtttgctttcatcaattgtgcagcgtagtgtttttagtcactggaatgattct
tatcctaatagtttattgataaacgataaaaaaacgaaaagctttttaaaagacaacgaa
catattctaaacgaactattaggtgtgtcgttacagtttaaagatagtatcgttattatc
aatgaatcagatggctattgccgagaaatagcgagaaaggtattactcgacactatacaa
tatactattgataatagtgaagatctctattcttgtattatacaaaaatgcgaacattac
aaacaaaaaacaatagaattcgtacttaaaaagtgcgaagaaatagatttactcgatttt
tcaaaatcacttgcttggcatatgggaaaattaaaatatcgtacgagttttgggcaaaat
atattagctcattcatatgaagttgccatgcttgcgtggcgtattgccggagaattgggt
ttttcacagtcccttagtaaaagaggagcttttttacacgatataggtaaagctgtagat
cataaagaagcaggtggacattcttctttaggcgaacaaattctgaaggatgaaaatgag
gcatctcaagtaatcgaaggtattgtggagcaccatgaagatgcttctccagaaaaacca
tatgccgcgattgttagtatttctgatgctattagtgcagcacgacctggtgcaagaaga
gaaacatttgaaaagtacacaaaaaaattacaaaagatagaatcccttactaagaatatc
aaaggaattcgagatgcctatgctgtttcagcgggtagagaaatacgcgttattgttcaa
ccagatattataaatgatcatgatgcacaaaaaatagcaaaagagctagctatatctatt
ggtaaagaaattttatattctggtgtagtaagagtaactgtgatccgagaaaaaacattt
gaagtttatacatga
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