Candidatus Uabimicrobium helgolandensis: UABHE_003028
Help
Entry
UABHE_003028 CDS
T10824
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
uhl Candidatus Uabimicrobium helgolandensis
Brite
KEGG Orthology (KO) [BR:
uhl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
uhl03016
]
UABHE_003028 (thpR)
Enzymes [BR:
uhl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
UABHE_003028 (thpR)
Transfer RNA biogenesis [BR:
uhl03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
UABHE_003028 (thpR)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Motif
Other DBs
NCBI-ProteinID:
XEY25215
LinkDB
All DBs
Position
complement(4177755..4178336)
Genome browser
AA seq
193 aa
AA seq
DB search
MSSKRMFIAFSFDEEIKQRITQSQNTLRNEMPTGIKWVGAESFHITAKFLGDTDEHLIPQ
ITQIMEETLAEQQRQQIQLKELGVFPTKKNPRILWLGTIGAKELLNHVHSQLENNLENLG
FAKETKFSGFNPHITLGRVKHLPQNFFPVFEAHKDIFVTNCEINALTLYESQSVQSGKYK
KVIYKPLACVHIS
NT seq
582 nt
NT seq
+upstream
nt +downstream
nt
atgagtagcaaaagaatgtttattgctttttcctttgatgaagaaataaaacaaagaatc
acacaatcacaaaatactttacgcaacgaaatgccaacaggaattaaatgggtaggggca
gagagttttcatatcactgctaaatttttaggtgatacagacgaacaccttattccacaa
ataactcaaataatggaagaaactctagccgaacaacaacgtcagcaaatacagttaaaa
gagctaggagtttttcctacaaagaaaaacccgcgtattttgtggctaggcaccataggt
gctaaagaattactgaaccatgtacattcacaattagagaataatttagaaaatctcggc
tttgccaaagaaacaaaattttcaggctttaatccacatataactttggggcgtgtaaaa
cacttaccacagaatttctttccagtgtttgaagctcacaaagatattttcgtaacaaat
tgtgagataaacgccttaactttatacgaaagtcaatccgttcaaagtggaaaatataaa
aaagttatatataaaccacttgcttgtgttcatatatcgtaa
DBGET
integrated database retrieval system
