Candidatus Uabimicrobium helgolandensis: UABHE_003103
Help
Entry
UABHE_003103 CDS
T10824
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
uhl Candidatus Uabimicrobium helgolandensis
Pathway
uhl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
uhl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UABHE_003103
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
uhl03019
]
UABHE_003103
03400 DNA repair and recombination proteins [BR:
uhl03400
]
UABHE_003103
Enzymes [BR:
uhl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
UABHE_003103
Messenger RNA biogenesis [BR:
uhl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
UABHE_003103
DNA repair and recombination proteins [BR:
uhl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
UABHE_003103
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
HRDC
RQC
RecQ_Zn_bind
ResIII
DUF6293_C
SPOC
HTH_27
SNF2-rel_dom
Cas3-like_C_2
Staph_reg_Sar_Rot
SAM_GIDA_C
Motif
Other DBs
NCBI-ProteinID:
XEY25288
LinkDB
All DBs
Position
complement(4266698..4268842)
Genome browser
AA seq
714 aa
AA seq
DB search
MSKIFTITQALEILKIKFGYNDFLPGQKVVMEDVLSRKDVVTIMPTGAGKSMLYQLPAII
FPGTVIVISPLISLMKDQVDSLLQLGIKATYINSSLNATERHNKVQAMQLGHYDIVYVSA
ERLQHQGFQEALRSTNIAMLAIDEAHCISQWGHDFRPDYLKIKDIREHLNFPQTIALTAT
ATQIVREEIASRLDLNTWADHVAGFDRNNLYFSVAFSPSKKAKIDSIYDIFQEKGAAGIV
YASTRKNVEYVCNELSALGINVQKYHAGLADNIRETIQNDFMEDKIDLIVATNAFGMGID
KSNIRFVVHFDIPGDMESYYQEVGRAGRDRKPASCYLLFNYADTRIPRFFIEEAHPTIQF
VHTVWSFIQNEQVVPSIDSITSQCKASSHMTVRYTLGFFERAGLVAKANPGDFYVLTPSK
EGFQILENIINNDAKRKEHDEQKLNNMIKYAYHKGCRRLWILDYFGDSSTKESCNACDNC
NMEVTLNEVVGDDLINIQKALSAVARLNGRLGKVRIAQLLVGSKSKDILSLNITDIPTYG
ALKKYSQTYVCEFLDKLIEMGYIQVRLKDGRYPLLSLTEGGRAIMMGEEKCYFPQDSLLQ
ITKKTTKRSTKLDTLRNFSKGKNTTLESKTEVATHKDTLHLYKKLSEMRRRISQEINKPA
FVVLHNTTLEELAKSKPQTLEEVGQVSGIGKAKLEKYGCEILQIINDTCTDKGI
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
gtgagtaaaatttttacgataacacaagctctcgaaatattaaaaattaagtttggctat
aatgattttttacctgggcaaaaagtcgttatggaagatgtactaagcagaaaagatgtt
gttactattatgcctactggtgctggtaaatctatgctgtaccaactaccagcaattata
tttccaggaacagttattgtcatttctcctctcataagtttaatgaaagatcaagtagat
agtttgctacaacttggaattaaagcaacttatataaacagttctctaaacgcaacagaa
agacacaataaagtacaagcaatgcaactaggccattacgatattgtatatgtttctgcg
gaaagattacaacaccaaggttttcaggaagcactacgctctactaatattgcaatgctg
gctatagatgaagcgcactgcattagtcaatggggacatgattttcgtccagactattta
aaaataaaagacatcagagagcatttgaactttcctcaaaccattgcattgacagcaaca
gcaacccaaatcgtacgcgaagaaatagcaagtagactagatttaaatacatgggcagac
catgttgcaggatttgatcgcaataatttatatttttctgtagcattctctccgtcaaaa
aaagccaaaattgatagtatctatgatattttccaagaaaaaggcgctgctggaattgtc
tatgcgagtacaagaaaaaatgttgaatacgtttgtaatgaattaagtgctctaggaatt
aatgttcagaaataccacgctggactagctgacaatattcgcgaaacaatacaaaatgat
tttatggaagacaaaattgatttaattgtagcgacaaatgcttttggtatggggattgac
aaatctaatattcgttttgttgtccactttgatattcctggagacatggagtcttactat
caagaggtaggtcgcgcaggtagagaccgtaaacctgcttcttgctatttattatttaac
tatgctgatacgcgtataccacgtttttttattgaagaagcccatcctaccatccaattt
gtacacacagtgtggagctttatacaaaatgaacaagttgtaccaagcatagactcaata
acttcgcaatgcaaagcatccagccatatgactgtacgctatactttaggtttttttgaa
agagcaggtcttgttgcaaaagcaaatccaggtgatttctatgtattgacaccttcaaaa
gaaggttttcaaattctagaaaatatcatcaacaatgacgcgaaacgtaaagaacatgac
gaacaaaaactaaacaatatgataaaatacgcttatcataaaggttgtaggcgattgtgg
attttagattactttggtgatagtagcacaaaagaaagttgcaatgcttgcgataattgt
aatatggaagttaccctaaacgaggttgtaggtgatgatctcattaatattcaaaaagcc
ttaagtgctgttgctcgtttaaatgggcgcttaggaaaagtaaggattgctcagttacta
gttggatcaaaatcaaaagatattttatctttaaacattactgatattccaacatatgga
gcgctaaaaaaatattcgcaaacctatgtgtgtgagttcttggacaaattgatcgaaatg
ggttatatacaagtacgtttaaaagatggccgttatcccttgttaagtcttacggaaggt
ggaagagctattatgatgggagaagaaaagtgttattttccacaagatagcctgttacaa
atcaccaaaaaaacaacaaaacgctcaacaaaattagatactttacgcaacttcagtaaa
ggcaaaaataccacactcgaatcgaaaactgaagttgcaacccataaagataccttacat
ttgtacaaaaaactttcagaaatgcgtaggcgaatctctcaagaaatcaacaagcctgct
tttgttgtgctacataacacaactttagaagaactggcaaaatccaaaccacagacactt
gaagaagtaggacaagtatctggtattggaaaagcaaaactagaaaaatatggttgtgaa
attttacaaattattaatgatacatgtactgacaaaggaatataa
DBGET
integrated database retrieval system
