Candidatus Uabimicrobium helgolandensis: UABHE_003469
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Entry
UABHE_003469 CDS
T10824
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
uhl Candidatus Uabimicrobium helgolandensis
Brite
KEGG Orthology (KO) [BR:
uhl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
uhl03016
]
UABHE_003469
Enzymes [BR:
uhl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
UABHE_003469
Transfer RNA biogenesis [BR:
uhl03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
UABHE_003469
Prokaryotic type
tRNA splicing ligases
UABHE_003469
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
XEY25638
LinkDB
All DBs
Position
4778068..4779450
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AA seq
460 aa
AA seq
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MKQKQLLDIGVDPDDIDFALELVQKAREKGLNKKKIHRQLQLAISKPDANFTNPYFGVLA
KKVFKDRAFKERKQPAPWEIWGEDLPEGAVKQMENACRLPISWRGALMADAHQGYGLPIG
GVLATEGAVIPYAVGVDIACRVKMTVFDSPAQDVDDNKDFLIKTLEKDTLFGIGKAFDRS
HDHPVLQEDWSFSKVTKHVKPRAIRQLGSSGSGNHFVEFGELTLTHGALGLESGSYLAVL
SHSGSRGAGSAVANHYSKLAMKLRPNLPKELQHLAWLSLDSEEGQEYWQAMELMGKYAAA
NHHIIHKKICKSLGAKPLLQIENHHNFAWKEMHDGKEVIVHRKGATPAGEGDIGIIPGSM
VNSCYVVRGKGNESSLLSAPHGAGRVMSRRQAKRSFNWTDVNQVIKSKNVTLLSAGLDEA
PSVYKDIDMVMRHSENLVEILACFQPRIVKMAKDGERPED
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaaaagcaactgctagatataggtgtagatcccgatgatattgattttgcgctt
gaacttgttcagaaagcgcgagaaaaaggtcttaacaagaaaaaaatccaccgacaatta
caactagcaataagtaaaccagatgcgaattttaccaatccttattttggtgttcttgcc
aaaaaagtttttaaagaccgtgctttcaaagaacgtaaacaaccagcaccatgggaaatt
tggggagaagatcttcctgaaggagctgttaaacaaatggagaatgcttgtcgtttgcca
atatcatggcgcggagcacttatggcagatgcccatcagggttatggccttccaattggc
ggagttttagcaacagaaggagctgtaattccttatgctgtaggagttgatattgcttgt
cgcgtgaaaatgacagtttttgattcaccagcgcaggacgtggacgataataaagacttt
ttaattaaaacgcttgaaaaagatacactgtttggtattggcaaagcctttgatagatct
cacgatcatcctgttttgcaagaagattggtctttttccaaggtgacaaaacatgtaaaa
cctcgtgcaattaggcaattaggttctagcggttcagggaatcactttgttgagtttggt
gaacttactttaacgcacggtgctcttggtttagagtctggatcttatttagctgttctg
tcacatagtggcagtcgcggcgctggtagtgcggtagcaaatcactattcaaaactcgca
atgaaattgcgcccgaatttaccaaaagaattgcagcatcttgcttggttatctttagat
agtgaggaaggtcaagagtattggcaagcaatggagcttatgggaaaatatgctgcagct
aaccatcacattattcataaaaaaatctgtaaatctctaggagccaaaccgctcttgcaa
atagagaaccatcataactttgcgtggaaagaaatgcacgatggcaaagaagttattgtc
caccgtaaaggagcaactccagcaggagaaggagacattggcattataccaggttcaatg
gtaaattcatgttatgtcgttcgtggtaagggaaatgaaagctctctgttaagtgcgcct
catggagcaggaagagtaatgtcgcgtcgtcaagcaaaaagaagttttaattggacagat
gttaatcaagtaattaagagcaaaaatgtgacgttgttaagcgctggtctcgatgaagca
ccaagtgtttataaagatatcgacatggtcatgcgtcactccgaaaacttggtagaaatc
cttgcttgttttcaaccgcgaattgtcaaaatggcgaaggacggtgagcgtccagaggat
tag
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