Candidatus Uabimicrobium helgolandensis: UABHE_005083
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Entry
UABHE_005083 CDS
T10824
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
uhl Candidatus Uabimicrobium helgolandensis
Pathway
uhl02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
uhl00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
UABHE_005083 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
uhl03021
]
UABHE_005083 (rpoD)
Transcription machinery [BR:
uhl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
UABHE_005083 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
COG3_N
Nuf2_DHR10-like
DUF4337
Motif
Other DBs
NCBI-ProteinID:
XEY27176
LinkDB
All DBs
Position
complement(6889508..6891145)
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AA seq
545 aa
AA seq
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MEKVVDSDLKAVLETGKQKGFLTYDEFNDLLPDEDPEKLDNILMTLDEHGIELIDEDSTD
ISLDRDLREGDEEIDEEMIIEDTYSERIDDPVRMYLTQMGEIPLLKREEEIKLAKKIELT
RKRFRKKVLESEVSLEVALEILIDVQNGELAFDRTLRGNNTLELKKTDMESRLFENIETL
GKMLEKNRKDFKEYLSSKPLSSERTKLVKRIRSRRKKGVILLEELGLQTKKIRPMMQELQ
KLSRKVQSCLRELKEIEGNRRRTSRVKKLKKDLEELLFKTRESPEKLKRRVEQVEERYEE
YESAKRKLSSGNLRLVVSIAKKYRNRGLTFLDLIQEGNTGLMKAVEKYEYRRGFKFSTYA
TWWIRQAITRSIAEQARTIRIPVHMIETMSKLRNVSKKLIQKKGREPTIEEISKETNISI
DETKRVMKIAKLPISLDRPIGESDDSYFGDFIEDEGAESPVTAATHEMLKDKIESVLQTL
TYREREIIKLRYGIGDGYTYTLEEVGKLFNVTRERVRQIEAKAVRKLQHPVRARKLEGFL
DRDHL
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaggtcgttgattccgacttgaaagctgttttagaaacaggaaaacaaaaagga
tttcttacttacgacgagtttaatgacttgcttccagatgaggacccagaaaagttagac
aacattttgatgactcttgatgagcatggaattgaactaatcgatgaagatagtactgat
atcagtttagatcgcgatcttagagaaggcgatgaagaaattgatgaagaaatgatcatc
gaagatacttatagtgagcgtattgacgatcctgttcgtatgtacttaacccaaatgggt
gaaattccgcttttgaaaagagaagaagaaataaaattagcaaaaaaaatagaacttaca
agaaagcgttttcgcaaaaaagtactggagtcagaagtttcactagaggttgctcttgag
atacttattgatgtacaaaacggtgagttggcttttgaccgaactcttcgaggtaacaat
actcttgaactcaaaaaaaccgatatggagtctcgtctttttgaaaatatagagacttta
ggtaaaatgttagaaaagaacagaaaagattttaaagagtatttgagtagtaagcctctg
tcttctgagagaacaaaattagtaaaacgaatcagaagccgcagaaaaaaaggtgttatt
ctcttagaagaattgggattacaaaccaaaaaaatacgtccgatgatgcaagaactacaa
aaactatcgcgtaaagtacaatcgtgtttacgcgaattaaaagaaatcgaaggaaatcgt
cggcgaacatcaagagtaaaaaaactcaaaaaagatctagaagaactgttattcaagaca
agagaaagcccagaaaagctaaaacgacgcgtggagcaagtagaggaacgatacgaagag
tatgaaagtgcaaaacgcaaattgtctagtggtaacttaagacttgtagtttctattgct
aaaaaatatcgaaaccgaggtctaacatttctcgatttaattcaggaaggcaataccggt
ttaatgaaggccgttgaaaaatatgaataccgtcgaggattcaagttttcaacatacgca
acatggtggattaggcaagcaataaccagatcaattgcagaacaagcacgaacgattcgt
attcctgtacatatgatcgaaacgatgagtaaattgcgtaatgtgtctaagaaattaatt
cagaaaaaaggtcgcgaaccaaccattgaagagatttcaaaagaaacaaacatctccatt
gatgaaacaaaacgcgtgatgaaaatagcgaagctccctatttcattagaccgcccaatt
ggagaaagcgatgattcttactttggagatttcatcgaagatgaaggagctgaatcacct
gttacagcagccacacacgaaatgttgaaagacaaaatagaaagtgttttgcaaacgtta
acatatcgcgaacgcgaaattatcaaattgcgttacggtataggtgatggttatacatac
acattagaagaggtgggaaaactatttaacgtaactcgcgaacgcgttcgccaaatagaa
gcaaaagccgtacgaaaactacaacaccctgtacgtgctcggaaattagaaggcttttta
gatcgcgatcatctataa
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