Candidatus Uabimicrobium helgolandensis: UABHE_005431
Help
Entry
UABHE_005431 CDS
T10824
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
uhl Candidatus Uabimicrobium helgolandensis
Pathway
uhl03030
DNA replication
uhl03410
Base excision repair
uhl03420
Nucleotide excision repair
uhl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
uhl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
UABHE_005431 (polA)
03410 Base excision repair
UABHE_005431 (polA)
03420 Nucleotide excision repair
UABHE_005431 (polA)
03440 Homologous recombination
UABHE_005431 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
uhl03032
]
UABHE_005431 (polA)
03400 DNA repair and recombination proteins [BR:
uhl03400
]
UABHE_005431 (polA)
Enzymes [BR:
uhl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
UABHE_005431 (polA)
DNA replication proteins [BR:
uhl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
UABHE_005431 (polA)
DNA repair and recombination proteins [BR:
uhl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
UABHE_005431 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
UABHE_005431 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DNA_polI_exo1
DUF3913
HHH_2
HHH_5
Motif
Other DBs
NCBI-ProteinID:
XEY27504
LinkDB
All DBs
Position
7389260..7391923
Genome browser
AA seq
887 aa
AA seq
DB search
MDSLYKRFFIIDAFAYIFRSYYAIKHIDHNAVYGFTNTLKKIIDNEKPEYIAVSFDSIEP
TFRNEIYKEYKANRQEPPEDLRPQIPLVKEVVSAFNIPLIEVSGYESDDIIGTLAHHAQK
ENVQVVIITGDKDMLQLVKGNDVVVFDPGRTAQYLEEKDIPQHFGCRPDQIIDLLTIWGD
SSDNIPGIPGIGEKGAKKLLAEYDSLDGIYENLDKITRKSYREGLENSREKIPLLRELVT
ICRDVPIEYSLDRFKFKGIDNARCQELFAKLNFKRLLNEIPIELEECKQDYPIIDDENKL
RALCEKLEQQKLFVFDVETDSLEPLDANIVGMSFCTAKNDACYVPIAHIHQQKSWQELAT
KYLQPIFANKSIKKGAHNIKYDYSVLINNGWQCENIYFDTMILSYLLEPNENRHGLDHLA
EKMLKYQTISYESICGKGKKQISFAEADLEKAKQYASEDADICWQLYEILRDQVQEKNVQ
EVCEKIELPLLNVLSEMEQCGIRVDCDLLKNMSQKMQKQIETLEKEIYDLAGQEFNIKST
QQLGYILFEKLQIPPLKKTSKTKSYSTGHDVLEKLANQGHALPAKLLNYRELTKLKSTYV
DALPKLVHPKTSRVHTSFNQVVAATGRLSSTNPNLQNIPIRTEMGKEIRAAFIPAENQIL
ISADYSQIELRIMAHYCEDETLVSAFKNGEDIHLRTASEVFDIPIETVPAELRRAAKSIN
FGLLYGMGDFRLAQELNISRKEARNYIASYFEKMPRIQTFCDEIIEKAKEAGHVRTYFGR
LRQIPEINSRNKTRQKQGERLAVNTIIQGTAADIIKLAMIKLQQNIHTNNLKANLLLQVH
DELVLECPKQEQENIISILKESMENIVSLKVPLTVEAHSANNWKDAK
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
ttggatagcctatataaacgtttttttattatagatgctttcgcatacattttccgatcg
tactatgctataaaacacattgatcacaatgcagtatatggttttacaaacacactaaaa
aaaataatagataacgaaaagcctgagtacatagccgtttcttttgattcgatagaacca
actttccgcaatgaaatctacaaagagtacaaggcgaatagacaagagcctcccgaggat
ctgcgtccacaaattcctttagtaaaagaagttgtttctgcattcaatatacctcttata
gaagtaagtggctacgaatcagatgacatcattggtacattggcacatcacgcgcaaaaa
gaaaatgtgcaagttgttattatcactggtgacaaagacatgcttcagcttgtaaaaggt
aacgatgttgttgtttttgatccaggtcgtacagcacaatatcttgaagaaaaagatatt
ccgcaacattttggatgtagaccggaccaaatcatcgacttgctaacaatctggggagat
agttctgacaatattccaggtattccaggtattggggaaaaaggagctaaaaaattacta
gcagaatatgactccctagatggaatatatgaaaatcttgacaaaatcactcgtaaatca
taccgcgaaggtcttgaaaatagccgtgaaaaaataccactactgcgcgagctagttacc
atttgtcgcgatgttcccattgagtattcactagatcgtttcaaattcaaaggcatcgat
aatgcgcgctgccaagagttatttgctaaactaaattttaagcgtctattgaatgaaatt
cctatagaactagaagaatgtaagcaagactacccgattatcgacgatgagaacaaacta
cgcgctctttgcgaaaaattagaacaacaaaagctctttgtttttgatgttgagaccgat
tcactcgaacctcttgacgccaatattgtaggtatgtcattttgcacggcaaaaaacgac
gcctgttatgttcccattgcccacattcatcaacaaaaatcttggcaagaactagccaca
aaatatttgcaacctattttcgctaacaaaagcattaaaaaaggcgcacataacataaaa
tacgactactctgttttgataaacaacggttggcaatgtgaaaatatttacttcgacaca
atgatcctctcctatcttctagagcctaatgaaaatcgccatggattagatcatttagca
gaaaaaatgctaaaataccaaacaatctcctacgaaagtatttgcggtaaaggcaaaaaa
caaattagttttgccgaagcggacttagaaaaagccaaacaatatgccagtgaagatgcc
gacatatgctggcaactttacgaaatactacgcgaccaagtacaagaaaaaaatgtacaa
gaggtatgcgaaaaaattgaactaccattactcaatgttttatctgaaatggaacaatgt
ggtattcgcgttgattgcgatttattaaaaaatatgtcgcaaaaaatgcaaaaacaaata
gaaacgttagaaaaggaaatctacgatcttgcagggcaagaatttaacattaaaagcacc
caacaactaggttacattcttttcgaaaagctacaaattccgccgttaaaaaagacatca
aaaacaaaatcttatagtactggtcatgatgtactcgaaaaactagcaaatcaagggcac
gctttgccagcaaaactactcaattatcgcgaactgacaaaattaaaatctacttatgta
gatgctttaccaaagttagttcatccaaaaacaagtagagttcacacaagtttcaatcaa
gttgttgcagcaacaggccgcttgtcttctacaaacccaaacctgcaaaacattcccatt
cgaacagagatgggaaaagaaatccgtgctgcttttattccagcggaaaaccaaatcctt
attagtgccgactactcgcaaatagaacttcgtattatggcccactactgtgaagatgag
acacttgttagtgcttttaaaaatggtgaagatatccatttacgtacggcaagtgaggtt
tttgatatccctattgaaactgttccagcagaactaagacgtgctgcaaaaagtattaac
tttggtcttctttatggaatgggagattttcgtttagcacaagaattaaatatttccaga
aaagaagctcgtaattacatcgcgtcttattttgaaaaaatgccgcgcatacaaactttt
tgtgatgaaatcatagagaaagcaaaagaagcaggacatgtacgcacctactttggtcgt
ttacggcaaattccagaaataaattcgcgaaataaaacgcgtcaaaaacaaggagaacga
ctcgcagtaaacacaatcatacaaggtacagcggcagacatcattaaattagcaatgatc
aaattgcaacaaaatatacacactaacaacttaaaagctaatttattattacaagtgcat
gatgaattagtgctagagtgtccaaaacaagaacaagaaaatataatcagcatacttaaa
gaaagtatggaaaatatagtttcattaaaagttcctcttactgtagaggcacatagcgct
aataactggaaagatgcgaagtag
DBGET
integrated database retrieval system
