Candidatus Uabimicrobium helgolandensis: UABHE_005723
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Entry
UABHE_005723 CDS
T10824
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
uhl Candidatus Uabimicrobium helgolandensis
Pathway
uhl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
uhl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UABHE_005723 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
uhl03019
]
UABHE_005723 (pnp)
03016 Transfer RNA biogenesis [BR:
uhl03016
]
UABHE_005723 (pnp)
Enzymes [BR:
uhl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
UABHE_005723 (pnp)
Messenger RNA biogenesis [BR:
uhl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
UABHE_005723 (pnp)
Transfer RNA biogenesis [BR:
uhl03016
]
Prokaryotic type
tRNA degradation factors
UABHE_005723 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
KH_1
PNPase
KH-I_KHDC4-BBP
S1_RRP5
KH_KhpA-B
KH_2
KH_NusA_2nd
S1_2
CsrA
Motif
Other DBs
NCBI-ProteinID:
XEY27786
LinkDB
All DBs
Position
7806055..7808316
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AA seq
753 aa
AA seq
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MSFIVEKEIAGKTLKIETGKMARLAAGAVTIQYGDTIVLATVATKELSASRGFLPLLVEY
KEKSASVGKIPGGFYKREGRPTTKEILTMRLVDRSIRPLFHKSFCSEIQVIILVLSADQE
NDPDVLAMIGASSAIAVAGLPFCGPVGSVRVGRINGEFVLNPTLEQLETSDINLVVSGTY
DAINMVEAGANEVDESVMTQAILWAHEQIRTIIEMQKELMRKCNVSFPEEIAEEVCVEQE
NFYKTLQNKYSSQIEKNVQIHKKHDRSLAQKEHFSQIKLDLIGEEVSEENEEKETFLKNA
FQKLTKEIVRKLITRGKRVDGRGLKDIRNITSEVGLIPRTHGSSLFTRGETQSLVNVTLG
TSSDKQVIDGLHPEYHKRFILHYNFPPFCVGEVGFMRGPGRREIGHGALAERALEAVMPD
NERFPYTVRLVSDILESNGSSSMASVCGGTLSMMDAGVPIKKPVGGIAMGLVKEGNNFYI
LSDILGLEDHLGDMDFKVAGTQRGITALQMDIKITGINRQILEQALSQAREGRMHILREM
MKAISRPRKEISKYAPRVVRLKIDPEKIALVIGPGGKNIRSIQDTTGAKVDVENDGVITV
YCPKKDGALKAKEMIETLTEDLKVGKIYEGKVTSIKDFGAFVEIAPGLEGLVHVSELENS
FVQNVNDSVKVGDKISVKVLAIDDQNRVKLSKRAVEGPTSSEENKSEEDKGAETIVVENS
SNEDNSEPPRRQNNHRNHKKHYNRHKRNRHHKK
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
gtgagttttatcgtagaaaaagaaattgcaggaaaaacgttaaaaattgagaccggtaag
atggcgcgcctagctgcaggagcagtaaccattcaatatggtgatactattgtccttgca
acagttgcgacaaaagaattaagcgcaagccgaggttttttgccgttattggttgaatat
aaagaaaaaagcgcgtctgtaggaaaaattcctggtggtttttataaaagagaaggaaga
cctaccacaaaagaaattcttaccatgaggttagtggatcgctcaatacgtcctttgttt
cacaagagcttctgttctgaaattcaagtgattatacttgttctttctgccgaccaagaa
aatgatccggatgttctagcaatgatcggagcttcttccgcaattgctgttgctggattg
cctttttgtggtcctgttggttctgtacgtgtcgggcgaataaatggtgagtttgtttta
aatcctactctcgaacaattagaaacaagtgatattaatcttgttgtctcaggaacatat
gacgcaatcaacatggtcgaagctggtgcaaatgaagttgacgaaagtgttatgacccaa
gcaatactgtgggcccacgagcaaattcgaactatcattgaaatgcaaaaagagcttatg
cgtaaatgcaacgtttcttttccggaagaaatagcagaagaagtttgcgtagagcaagaa
aatttttacaaaactttgcaaaacaaatactcttctcaaattgaaaaaaacgtacaaatt
cataaaaaacacgatcgttccttggcccaaaaagagcacttttcacaaataaagctagat
ttgattggcgaagaggttagtgaagaaaacgaagaaaaagaaacttttttgaaaaatgct
tttcaaaaattgacaaaagagattgtacgtaaattaataacacgaggaaaaagagtcgat
ggacgcggcctcaaagatattcgtaacattacaagcgaagtagggttaatacctcggaca
catggctcatcgctttttaccagaggagaaacgcaatctttggtaaatgtgacactggga
acttcgagtgataagcaagtaattgatggtcttcatcccgagtatcacaagcgctttatc
ctccattacaactttccaccgttttgtgttggcgaggttggttttatgcgcggccctgga
cgacgagagattgggcacggagcattagccgaaagagcacttgaagcagtaatgccagac
aatgaacgctttccttacactgttcgtctagtttccgatatacttgaatctaacggatct
agttcaatggcaagtgtttgtggtggtaccctatcaatgatggacgcaggtgttccaatt
aaaaaacctgttggtggaattgcgatgggacttgtaaaagaaggtaacaatttttacatt
ctctcagacatccttggtctcgaagatcacttaggagatatggattttaaagtcgcaggt
acacaacgtggaatcactgctttacaaatggatatcaaaatcacaggtatcaatcgtcaa
atattagagcaagctcttagtcaggcacgcgaaggtcgtatgcatattttacgcgaaatg
atgaaagctattagtcgtccgcgtaaggaaatttctaaatacgctcctcgagttgtacga
ttaaaaatagacccagaaaaaattgctctagttataggtcctggtggtaagaacattcgt
agcattcaagacacaacaggtgcaaaagtagatgttgaaaacgatggagttattaccgtt
tattgtcctaaaaaagatggggctttaaaagcaaaagaaatgattgagacattgacggaa
gatcttaaagttggtaaaatctacgaaggtaaggttacctctataaaagattttggagca
tttgtagaaatagctcctggcctcgaagggcttgtccatgtttctgaactagaaaattcg
tttgttcaaaatgtcaacgatagcgtaaaagttggtgataaaatatcagtaaaagtttta
gctattgatgatcaaaatcgcgtaaagttaagtaaacgcgctgttgaaggcccaacatct
tctgaagaaaacaaaagcgaagaagacaaaggtgcggaaacgattgttgtagagaattct
agtaatgaagacaatagtgaaccaccaagaagacaaaacaaccatcgaaatcataagaaa
cattacaatagacataaaagaaatcgtcatcacaaaaaataa
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