Candidatus Uabimicrobium helgolandensis: UABHE_005996
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Entry
UABHE_005996 CDS
T10824
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
uhl Candidatus Uabimicrobium helgolandensis
Pathway
uhl03030
DNA replication
uhl03430
Mismatch repair
uhl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
uhl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
UABHE_005996 (dnaE)
03430 Mismatch repair
UABHE_005996 (dnaE)
03440 Homologous recombination
UABHE_005996 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
uhl03032
]
UABHE_005996 (dnaE)
03400 DNA repair and recombination proteins [BR:
uhl03400
]
UABHE_005996 (dnaE)
Enzymes [BR:
uhl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
UABHE_005996 (dnaE)
DNA replication proteins [BR:
uhl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
UABHE_005996 (dnaE)
DNA repair and recombination proteins [BR:
uhl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
UABHE_005996 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
XEY28053
LinkDB
All DBs
Position
8199865..8203302
Genome browser
AA seq
1145 aa
AA seq
DB search
MSDQFVHLHTHTHYSLLDGAIKIPNLVKAAREFGMPAIGITDHGNMFGALEFFQACKKEG
IKPIVGYEAYVAPNSRLARGRENARAFHVTLLAKNYTGYKNLMKLASEAYLTGFYYKPRI
DRELLAAHSEGIIAFSGCLASEICRNILNKDLKKARKVMGWYQDVFGEDFYIELQKNKIK
EQYIANDELIKMGKEFKLPLVYTNDIHYLRAEDAKPHDVLLCIQTGNLVKKADRFRFGSQ
EFYMKSPQQMRKEAEEFPGAAENTLLIAEKVNLEIPLGEIHIPKFDTPNDIPNEDYLRQL
CEEGLHKRYGEVKGEVKDRFEREFGVICKMGFASYFLIVWDFINYARQKEIPVGPGRGSA
AGSIIAYALTITDLDPLKYRLIFERFLNEGRNEMPDIDIDFETERRGEVIEYVSQKYGQK
QVAQIITFGTMAARAVIRDVARAMDIPLAVVDKVAKKIPAVPGITIEKALKEEEDFRKAY
KEDRLITELIDVARNLEGLNRQPGLHAAGVIIADADLTEYCPLYKSSDGTIATQYSMKYL
ESLGLLKMDFLGLSTLTLIDKALKIIHTNTGKEIDISKIPLDNKETYELLMRGDTGGVFQ
LESDGMRNLVKRLRPDRFEDIIALVALYRPGPLKSGMVDTYIRCKHGEEHPVYKHAILEQ
ILSETFGMILYQEQAMEIAKEMANFSLSEADKLRKAMGKKIQELMDSYREKFVAGAAEHE
ISEELAIEVYSQIEYFSGYGFNKSHSAAYALVTYQTAYLKALYPKEFMCALMTCENQNTD
KIVRYISECGSMDIEVLPPNINKSRSYFCVENEDKIRFGLSAIKGVGDKAVESMMETRDN
IGEFKSLIDLCENVDTRVANKQTLEALVKSGAFDCFERSRSQMFAGIPEMLKLGANIQKQ
KNSNQMDLFGDFAAEEVNEVSDADDLYPQVDDWSEIENLKFEKQTLGFYFSGHPLQQWSD
YIAMMCGRTIDSLYQENSAGASMLGGMISGKREITIKSGRNQGRKMAQVYLEDLTASCSM
ICFPDTYHKYSEYLQEDQAVFVRGKMNEQKDEPEIIIDQVIPMEQGLENLITRITLKIKN
KTEDEVRKLFDVCSKYRGDCKTFLHIEGKDIVTDLEVAEKYFLRPGVELFEEIEKIIGKG
AIMVM
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatcaatttgtacatttacatacacatacccattatagtcttttggatggagcg
attaaaataccaaatttggtaaaagcagcaagagaatttggtatgcctgctattggtatc
accgatcatggcaatatgtttggtgcccttgaattttttcaagcatgtaagaaagaaggt
attaaaccaattgttggctacgaggcttatgtcgcccctaatagtcgcttagcaagaggc
cgagaaaacgcacgcgctttccacgtaacactgcttgcaaagaactacacaggctataaa
aacctaatgaagctagcctcagaagcttatttgacaggcttttattataagccgcgtatt
gatcgtgagctattagcagcacatagcgaaggaatcattgcattttcaggttgtttggcc
tcagaaatttgtcgtaatattctcaataaggacctaaaaaaagcgcgcaaagtaatgggc
tggtaccaagatgtatttggcgaagatttttacattgagttacaaaagaacaaaataaaa
gaacaatatatcgccaacgatgagttaattaagatgggtaaagaattcaaattaccttta
gtttacacaaacgacatacactacttacgtgcagaagatgcaaagcctcatgatgtacta
ctctgtatccaaacaggtaacttagtaaaaaaagccgaccgctttcgctttggctcacaa
gaattttatatgaaatccccgcagcagatgcgtaaagaagcagaagaatttccaggggca
gccgaaaatacattgcttattgccgaaaaagtcaatttagaaatccccctaggagaaatc
cacattcctaaatttgatactccaaatgatattcccaacgaagattatttgcggcaactt
tgtgaagaaggcttacacaaacgttacggagaagtcaaaggagaagttaaagaccgcttc
gaaagagagtttggcgtcatttgcaaaatgggctttgcttcatacttcctgattgtatgg
gacttcattaactacgcacgacaaaaagaaattcctgtaggaccagggcgcggatctgct
gcgggaagtatcattgcctacgcgctaacaatcaccgatctcgatcctttgaaataccgt
ctcatttttgagcgttttttaaatgaaggacgtaatgagatgcccgatatcgatatcgac
tttgaaacagaacgccgcggtgaggttattgaatacgtatctcaaaaatacgggcaaaaa
caggtagcgcaaatcattacttttggaacaatggctgcgcgcgcggtaattcgcgatgtt
gcaagagctatggacattccacttgctgttgtagataaggtagcaaaaaaaatccctgct
gtgcctggaatcacaattgaaaaagctcttaaggaagaagaagattttcgcaaagcgtac
aaagaagatcgcttaatcacagaactaattgatgttgccagaaatttagaaggtctcaac
agacagccagggttacatgccgcaggagttatcattgccgacgcagatttaacagaatac
tgtccactttataaaagttctgacggcacaattgcaacgcaatattcgatgaaatactta
gagagtctcggtcttcttaagatggactttcttggactaagcacattaacacttattgat
aaagctcttaaaattatacataccaatactggcaaagaaattgatatttcaaagattcct
ctcgataacaaagaaacttacgaactacttatgcgcggagatactggtggagttttccaa
ttagaatccgacggaatgcgtaatcttgtaaaaagactacgccctgaccgctttgaagat
atcatagcgctcgtagctctctatcgtccaggtccactaaaaagtggaatggttgacacc
tatatccgttgtaaacatggtgaggaacatccagtatacaaacatgctatactcgaacaa
atcttatctgaaacttttggtatgattctataccaagagcaagcaatggagattgccaaa
gagatggctaatttttccctatccgaagcggataaactgcgcaaagcaatgggaaagaaa
atccaggagttaatggatagttaccgcgaaaaatttgtagccggcgcagcagaacatgag
atttcagaagagctagcaattgaagtttactcgcaaattgaatatttctcagggtacggt
tttaacaagtcacacagtgcggcatacgcgctggtaacataccaaacagcttacttaaaa
gcgctataccctaaagagtttatgtgtgctttaatgacgtgcgaaaaccagaataccgat
aaaatcgtgcgttatataagtgaatgcggatcaatggatatcgaagtgcttcctccaaat
atcaataaaagtcgttcctatttttgtgtagaaaacgaggacaaaattcgttttggcctt
tctgcaataaaaggtgtaggtgacaaagcagtcgaatcaatgatggaaacgcgcgataat
atcggtgaatttaaatcactcattgatctttgtgaaaatgtcgatacacgtgttgctaac
aaacaaaccctggaagcacttgttaaaagcggtgcttttgattgctttgaaagatcacga
agtcagatgtttgccggaattcctgagatgctaaaacttggtgcaaacattcaaaaacaa
aagaatagtaatcaaatggatttgtttggtgattttgcagccgaagaagtaaatgaagtt
tccgatgcagatgacttgtatccgcaggtcgatgattggagtgaaattgaaaatttaaag
ttcgaaaaacaaacacttggattttacttttcaggccaccctctacaacaatggtccgat
tatattgcaatgatgtgcggaagaactatcgattccttgtaccaagagaatagtgctgga
gcctcaatgcttggtggtatgatatcaggaaaaagagaaatcactatcaaaagtggtcgt
aaccaaggacgcaagatggcccaagtatacttagaggatctcactgccagttgtagcatg
atttgttttcctgatacatatcacaaatattcggagtatttacaagaagaccaagctgtt
tttgttcgtggaaaaatgaatgaacaaaaagacgaacccgaaatcataattgaccaagta
ataccaatggagcaaggtttagaaaacttaattacgcgtatcactttaaaaatcaaaaac
aaaacggaagatgaagtcagaaaattatttgacgtttgttctaagtaccgcggcgattgt
aaaacatttttacacattgaaggtaaggatatagtcacagacctagaagttgctgaaaag
tattttttgcgccctggtgtcgaattatttgaagaaatagaaaaaataataggcaaaggt
gcaataatggtaatgtaa
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