Candidatus Uabimicrobium helgolandensis: UABHE_006458
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Entry
UABHE_006458 CDS
T10824
Name
(GenBank) ATP-dependent DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
uhl Candidatus Uabimicrobium helgolandensis
Pathway
uhl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
uhl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
UABHE_006458
09124 Replication and repair
03420 Nucleotide excision repair
UABHE_006458
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
uhl03021
]
UABHE_006458
03036 Chromosome and associated proteins [BR:
uhl03036
]
UABHE_006458
03400 DNA repair and recombination proteins [BR:
uhl03400
]
UABHE_006458
Enzymes [BR:
uhl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
UABHE_006458
Transcription machinery [BR:
uhl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
UABHE_006458
Chromosome and associated proteins [BR:
uhl03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
UABHE_006458
DNA repair and recombination proteins [BR:
uhl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
UABHE_006458
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
PDDEXK_1
Helicase_C
PhoH
Motif
Other DBs
NCBI-ProteinID:
XEY28499
LinkDB
All DBs
Position
8800007..8802313
Genome browser
AA seq
768 aa
AA seq
DB search
MMPKNYSTKISVRELVEFVLRSGDLRHTPMSKNRLTDAITAHTLLQEQSPEGYIPEVSLK
YIFEQDDMFLQVQGRADGIYTTEEGVLIDEIKTTYVPLEKIQTNEVHWAQAKMYAFIYAH
EQDLSQLEVRLSYFHMETKETRYFVETFSLESLCSFVEGIVGEYFHWLKKKVLWLEKRQQ
SVHSLSFPFKKMRQGQQQLIDAVTDCIENKTKIFAQAPTGIGKTIATLYPAIKNIDDKIF
YLTAKNTGHQIPMQSLDKLRECGLKCKSIVITAKDKVCFCETKDINNCDFTIGYFDRVND
GLSNMLECDDWSADNIKDCAQKYRLCPYEFSLELSLWADCVICDYNYVFDPRVYLRRFFQ
NAKGNYYFLIDEAHNLIERARSMFSAQLEKKTVLEVRRAIKDHYPTIAKKIYKINTFLLQ
LKKRGENDIDDDMLQELLGTIQEACDQVDSYISQKGELPNILIDFYFSLITFSRVANEFL
DDNYCVHFEVQNGNLYLWCINPSDLLQKSFAKAHSSVLFSATLAPIDYCKRFLGEKEQDV
SLQLPSPFPAINFGLFVAGNIDTSFRYRHLSYEKIADYVATVSQIKTGNYLAFFPSYAYL
SKVIEIFREKYSHIDLLEQQRNMDDEQRKEFLQNFTPNNKQSLVGFVVLGGIFSEGIDLV
GDRISGVVNIGVGLPQIGTKRNLIRDYFNERQENGFAYAYAYPGMNRVMQAAGRVIRTEK
DIGIVLLIGRRFEQSPYKETMPSHWYPHRVYNEENLSRLIKSFWEYPR
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atgatgcctaaaaactactctactaaaatttccgtacgcgaactggttgaatttgtattg
cgcagtggcgacttacggcatactccaatgtccaaaaatcgactaacagatgccattacc
gcccacactcttttgcaagagcagagtccagaaggatatattcctgaagtatccttgaag
tatatttttgagcaagatgatatgtttttacaagtccaagggcgcgctgatggtatatat
accacagaagaaggtgttttgattgatgagatcaaaacaacatatgtgcctttggagaaa
atacaaacaaatgaagtgcactgggcgcaagcaaagatgtacgcttttatttatgctcat
gaacaagatttatcacagttagaagttcgtttatcctattttcatatggaaacaaaagaa
actcgttactttgttgaaactttttctttggaaagcttgtgtagtttcgttgaaggaatt
gttggcgaatattttcactggttaaagaaaaaagtattatggttagaaaaacgacaacaa
tcagtacattctctttcttttcctttcaaaaaaatgcggcaagggcaacaacaattaatc
gatgcagttactgattgtatagagaataaaactaaaatctttgcccaagcccctacagga
attggtaaaacaattgcaaccttgtatcctgcaataaaaaatatagatgacaagattttc
taccttaccgctaaaaacaccggacatcaaattccaatgcaatctcttgataagttgcgc
gaatgcggtttaaagtgtaaatcgattgtcattaccgcgaaagataaagtatgtttttgc
gaaacgaaagacattaataactgtgattttactattggttattttgatcgagtgaacgac
gggttaagcaatatgttggaatgcgatgattggagtgccgacaacataaaagattgcgcc
caaaaatatcgtttatgtccatacgaattttcattagagctatctttatgggccgattgt
gttatctgtgactataattatgtttttgaccctcgcgtttacttgcggcggttttttcaa
aatgcaaaaggaaattattattttctcattgatgaagctcataatttaatagaacgtgcg
cgctctatgttttcagcacagttagagaaaaagacagtattagaagttcgcagagcaata
aaagaccattatcctacgattgctaagaaaatatataaaattaatacctttttgttacaa
ttaaaaaagcgtggtgaaaatgatattgatgatgacatgttacaagagcttttgggcaca
attcaagaagcatgcgatcaggtagactcttatatttcacaaaagggagaattaccaaat
attcttatcgacttctatttctcattgattactttttcgcgcgtcgctaatgaatttctc
gatgataattattgcgtgcattttgaagtccaaaacggaaatttatacttatggtgtatt
aatccaagtgaccttttacagaaatcttttgcaaaagcgcacagttcggtactattctca
gcaacgcttgctcctatagattattgcaagagatttcttggagaaaaagagcaagatgtt
tcattacaactaccttcaccattcccagcgattaactttgggctttttgtcgctggaaat
atagacacctcatttcgctaccgtcatttaagttatgaaaaaattgccgattatgttgcc
actgtttcgcaaataaaaaccggaaactatttggctttttttccttcttatgcatatcta
tccaaagttatcgaaatttttcgcgaaaaatactcgcacattgatttattagaacaacaa
cgcaatatggacgatgaacagagaaaagaatttttgcaaaattttactcccaacaataaa
caatctttagtgggatttgtagtattaggtgggattttttctgaaggaatagatctcgta
ggagatagaatttcaggggttgtgaatattggagttggcttaccacaaatcggaacaaag
cgtaatttgatacgagattattttaatgaaaggcaagagaatgggttcgcctatgcttac
gcttatccaggaatgaatagagtaatgcaagcggcaggaagagtaattcgaactgaaaaa
gacatcggaatcgttcttctgattggtcgtcgttttgaacaatcgccatacaaagaaaca
atgcccagtcattggtatcctcatagagtgtataatgaagaaaatttatcgcgcttaatc
aaaagtttttgggagtacccaaggtaa
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integrated database retrieval system
