Candidatus Uabimicrobium helgolandensis: UABHE_006801
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Entry
UABHE_006801 CDS
T10824
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
uhl Candidatus Uabimicrobium helgolandensis
Pathway
uhl03410
Base excision repair
uhl03430
Mismatch repair
uhl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
uhl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
UABHE_006801 (recJ)
03430 Mismatch repair
UABHE_006801 (recJ)
03440 Homologous recombination
UABHE_006801 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
uhl03400
]
UABHE_006801 (recJ)
DNA repair and recombination proteins [BR:
uhl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
UABHE_006801 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
UABHE_006801 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
UABHE_006801 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
XEY28823
LinkDB
All DBs
Position
complement(9236322..9238079)
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AA seq
585 aa
AA seq
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METRWLQKERDEGAIKSLVEAAEIDELFATILVNRDIATLDQFNDYLNPKLKNMHDPHLL
YDMERAVERIKKAIEEDQKIYVYGDYDVDGVTGTSVVYECLKVLKANVFFYIPHRLKEGY
GLNIDAIQHIIDEKASLVITVDCGIRGFKPIEYAQERGLDVIVTDHHEVDPDNLPQAYAI
VNPKDQRGNYPFKGICGASVGFKLSWALCQAFSPEHEDKVRPELREFLLDAMALVAIGTV
ADVVPLLEENRVVTHFGLKALEKSENVGLKALKEVSKLSQASPITPEHVGFRLGPRINAM
GRMEHSRYSVELLTTKSLTTAQKLARSMEVENQKRRKLQQRIFKQALSQMERYEYHKENV
IILADEGWHPGIIGIVASRIVEKHYRPVCIIGVENGYGKSSARSIPGFNLFHALKHCEEL
LVAFGGHSMAAGFKIEQDKIPAFRRKMNEFAEEVLTPEHFIHSLHIDLEITLDKIDWEFA
GNIRKMSPLGEKNPPPVVIAHGLEVVMNPAPTRAGAKGEHLIFYVRQNDKTFKAVYFGQG
ERLYELIEAKVCDLAFSPTINTWGENHNIELMVKDMKTSVVKKGF
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
ttggaaacacgttggctacaaaaagaaagagatgaaggggcgataaaaagccttgtagaa
gcggctgaaattgatgaattatttgcaacaatcctagtaaatagagatatagcaacttta
gatcaatttaatgactacctcaatcccaagttaaaaaacatgcatgacccacacttgtta
tacgatatggagagagctgtagagcgcataaaaaaagcgatagaggaagatcagaaaata
tatgtatacggtgattatgatgttgatggagttactgggacatcagttgtttatgagtgc
ctaaaggtgctaaaagccaatgtgtttttttatatcccacacagattaaaggaagggtac
ggcttaaatatcgatgcaattcaacatataattgatgaaaaagctagtttagtgattaca
gttgattgcggaatacgcggttttaaaccaattgaatatgcgcaagaacgtggcttagat
gtaattgttactgatcaccacgaagtagatcctgataacctaccacaagcctacgccatt
gtaaatcctaaagaccaacgcggtaattatccttttaaagggatctgcggcgcaagtgtt
ggttttaaattgtcctgggcactttgccaagcattttcgcctgaacacgaagacaaagta
cgtccagaacttagagaatttcttctagatgcgatggctttagttgccattggtaccgtt
gcagatgttgtacctcttttagaagaaaatcgcgtagtaacccattttggtttaaaggct
ctcgaaaaatcagaaaatgttggtctaaaagcattaaaagaggtttctaaacttagccaa
gcaagccctattactcctgaacacgtcggtttcagactaggtccaagaataaacgccatg
ggtcgaatggaacattcccgctattctgtagaactactcacaacaaagagcctaactact
gcgcaaaaattagctcgtagcatggaagtagaaaaccaaaaacgtcgaaaattacagcaa
cgaatattcaagcaagcattgtcccaaatggagcgctacgaatatcacaaagaaaatgta
attattcttgctgatgaaggttggcatcctggtattattggaattgttgcaagccgtata
gtagaaaaacactatcgtccagtgtgcataattggtgtcgagaatggttatggtaaatcg
tctgcacgatcaatcccaggcttcaacctttttcatgccctaaaacactgcgaagaacta
cttgtcgcttttggtggccacagcatggcagcaggatttaagatagaacaagataaaata
cctgcttttcgtcgtaaaatgaacgagtttgctgaagaagtattaactcctgaacatttc
attcattctttacatatagatttagaaattactctcgataaaatcgattgggaatttgcc
ggtaatattagaaagatgtcacctcttggagaaaaaaatcctccgccagtagtgatagcc
cacggactagaagttgtaatgaatccagctccaacaagagcaggagcaaaaggcgaacat
ttaatattttacgttcgtcaaaatgataaaacattcaaagcggtttattttggtcaaggt
gaacgattatacgaacttatcgaggcaaaagtttgcgatctagctttttctccaacaatt
aatacctggggagaaaatcacaatatcgaacttatggtcaaagatatgaaaacatctgtt
gttaaaaaaggcttttaa
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