Urbifossiella limnaea: ETAA1_27130
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Entry
ETAA1_27130 CDS
T07028
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
uli
Urbifossiella limnaea
Pathway
uli03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
uli00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ETAA1_27130 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
uli03019
]
ETAA1_27130 (rne)
03009 Ribosome biogenesis [BR:
uli03009
]
ETAA1_27130 (rne)
Enzymes [BR:
uli01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ETAA1_27130 (rne)
Messenger RNA biogenesis [BR:
uli03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ETAA1_27130 (rne)
Ribosome biogenesis [BR:
uli03009
]
Prokaryotic type
rRNA processing factors
ETAA1_27130 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QDU20753
UniProt:
A0A517XTD2
LinkDB
All DBs
Position
complement(3253139..3255874)
Genome browser
AA seq
911 aa
AA seq
DB search
MKKEMLINVLQPEECRIAIVEDGQLEELYVERSSQESYVGNIYKGRIVNIEPSIQAAFVD
FGIGRNGFLHVSDVDPAYYKHLLSKEALAEYEAEIDREYGGGGAQRQNQGDRGGRGRDRG
ERGDRGERGGGGQNFREPAQPSSWLQPQPAGPASVDDDGFTEGLDGAAAPAAEAPDEEPI
APFADGPDEPPAAVAPPPRPPRQARPPAPPVEDDEFGAGLDDDDGFAEGIAESPAPSEET
SAPEAEAEAEEPKKKPRSRRPRKTDEAKPEDAAGEEGEAKPKPRRRKKKADGEGDAPEGG
DAPPDVPPLTMGGAEHRTSPPGDEPEIRPFFEGADDFDPDAPNDRFADGTPPELPAIPVD
DAEDFEPETAEAAEEEAREVEKAEREAPVGEPGRGFNDDFDDARPEPRGDRGGRDRDRDR
GRGGRDRDRGRGPGRDRDDRGPRPAAGRGPDRGPRFGNGGPGGPKGGRDRGLPKPPIQEI
FKRGQEVIVQVIKEGIGTKGPTLSTYISIAGRYLVLMPSLNRVGVSRKIEDHEARRRLRD
IMATLGPPKGVGFIVRTAAIDRDAQELRNDLAYLLRLWQVVVKRIKRVAAPVEIYRESDL
ITRTIRDIFTADVSSIYVDEQTAFDHAREFLQIVMPKYADRIRHFDGTEPLFHKYGIEDE
IARIHQKRIELPEGGSIIIEQTEALVAIDVNSGNFRAENNAEETAYQMNLRAAKEIARQL
RLRDLGGVIVNDFIDMRSESHRRNVENVLRDAMRRDRARTKILRISQFGIIEMTRQRIRP
SLKRSIFADCSHCKGTGFVKTSESASIEVMRLVQLAAHRAPAVQSVHVTVHQDVAHYLQN
RRRRELARLEEKANFEVVVTGQMGVSPDTCLVKCFDHNGAEVRLIPPAPVRLAGGRIPPG
RPQPRFPQQLD
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaagaaatgctgatcaacgtcctccagccggaggagtgccgcatcgccatcgtc
gaggacggccagctcgaggagttgtacgtcgagcgctccagccaggagagctacgtcggc
aacatctacaagggccgcatcgtcaacatcgagccgagcatccaggccgcgttcgtggac
ttcggcatcggccgcaacggcttcctccacgtctccgacgtggaccccgcctactacaag
cacctcctctcgaaggaagcactcgccgagtacgaggccgagatcgaccgcgagtacggc
gggggtggagcccagcgccagaaccaaggcgaccgcggcggccgcgggcgtgaccgcggc
gagcggggtgaccgcggcgagcgcggcggcggcgggcagaacttccgcgaaccggcgcag
ccgagcagctggctccaaccgcagccggccggccccgcgtcggtcgacgacgacggcttc
accgaaggcctcgacggcgcggcggccccggccgccgaggcgccggacgaggagccgatc
gcgccgttcgccgacgggccggacgaaccgccggccgccgtcgcccccccgccgcggccg
ccgcgccaggcccggccgccggccccgccggtcgaggacgacgagttcggcgccgggctc
gacgacgacgacggcttcgccgaaggaatcgccgagtcgcccgcgccgtccgaggagacc
tcggcccccgaggccgaggccgaggccgaggagccgaaaaagaagccgcgcagccgccgg
ccgcggaagacggacgaggcgaagcccgaggacgccgccggcgaggagggcgaggccaag
ccgaagccgcgtcgccgcaagaagaaggcggacggcgagggcgacgcgcccgagggcggc
gacgccccgccggacgtgccgccgctgacgatgggcggggccgagcaccgcaccagcccg
ccgggcgacgagccggagattcggccgttcttcgagggcgccgacgacttcgaccccgac
gccccgaacgaccgcttcgccgacggcaccccgcccgagctgccggcgatcccggttgac
gacgccgaggacttcgagccggagaccgcggaggccgccgaggaggaggcccgcgaggtc
gagaaggccgagcgggaggcacccgtcggcgaaccgggccgcggcttcaacgacgacttc
gacgacgcccgccccgagccgcgcggcgaccgcggcgggcgcgaccgcgaccgcgaccgc
gggcgtggtgggcgggaccgcgaccgcgggcgcggtcccggtcgcgaccgcgacgaccgt
ggcccccgcccggcggccgggcgcggcccggaccgcggcccgcgcttcggcaacggcggc
cccggcgggccgaagggcggccgcgaccgcgggctgccgaagccgccgatccaggagatc
ttcaagcgcggccaggaggtcatcgtccaggtcatcaaggagggcatcggcacgaagggg
ccgacgctctcgacgtacatcagcatcgccggccggtacctggtgctgatgccgagcctg
aaccgcgtcggcgtgtcgcggaagatcgaggaccacgaggcgcgccgccggctccgcgac
atcatggccacgctcgggccgccgaagggcgtggggttcatcgtgcgtaccgccgccatc
gaccgcgacgcccaggagctgcgcaacgacctggcgtacctgctgcggctgtggcaggtg
gtggtgaagcggatcaagcgggtcgcggccccggtcgagatctaccgcgagtccgacctg
atcaccaggaccatccgcgacatcttcaccgcggacgtgagttccatctacgtggacgag
cagaccgcgttcgaccacgcccgggagttcctgcagatcgtcatgccgaagtacgcggac
cgcatccgccacttcgacgggaccgagccgctgttccacaagtacggcatcgaggacgag
atcgcccgcatccaccagaagcggatcgagctgcccgagggcgggtcgatcatcatcgag
cagaccgaggcgctggtggccatcgacgtgaacagcggcaacttccgggcggagaacaac
gccgaggagacggcgtaccagatgaacctccgggccgcgaaggagatcgcccggcagctg
cggctccgcgacctgggcggcgtcatcgtcaacgacttcatcgacatgcggagcgagtcg
caccggcggaacgtcgagaacgtgctgcgggacgcgatgcggcgcgaccgggcgcggacg
aagattctccgcatcagccagttcggcatcatcgagatgacgcgccagcggatccggccg
agcctgaagcgaagcatcttcgccgactgctcgcactgcaagggcaccggcttcgtcaag
acctcggagagcgcgtcgatcgaggtgatgcggctggtgcagctggcggcccaccgggcg
ccggcggtgcagtcggtccacgtgacggtccaccaggacgtggcccactacctgcagaac
cgccggcggcgcgagctggcgcggctggaggagaaggcgaacttcgaggtggtggtgacg
gggcagatgggcgtgtcgccggacacgtgcctggtgaagtgcttcgaccacaacggcgcc
gaggtgcggctgatcccgccggccccggtgcggctggccggcggccgcatcccgccgggg
cggccgcagccgcgcttcccgcagcagctggattga
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