Urbifossiella limnaea: ETAA1_41820
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Entry
ETAA1_41820 CDS
T07028
Symbol
cshA_1
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
uli
Urbifossiella limnaea
Pathway
uli03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
uli00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ETAA1_41820 (cshA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
uli03019
]
ETAA1_41820 (cshA_1)
03009 Ribosome biogenesis [BR:
uli03009
]
ETAA1_41820 (cshA_1)
Enzymes [BR:
uli01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ETAA1_41820 (cshA_1)
Messenger RNA biogenesis [BR:
uli03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ETAA1_41820 (cshA_1)
Ribosome biogenesis [BR:
uli03009
]
Prokaryotic type
rRNA helicases
ETAA1_41820 (cshA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
WSD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QDU22205
UniProt:
A0A517XXK1
LinkDB
All DBs
Position
complement(5023604..5025622)
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AA seq
672 aa
AA seq
DB search
MTDPEPTPPAEPAVPPEPAAVEPPKPEPVAESKFAGLGLDAKLLAALTVLGYEEPTPIQR
EAIPLVLQGTDIVGLAATGTGKTAAFALPLIQRLAANTSKVKPAALILVPTRELAMQVAE
AVHKYGRPYSTRVLPVYGGAAMGQQARALDRGVDVVVATPGRALDFLRRGTLKLAGVSVV
VLDEADEMLDMGFAEDIEAILNETPKERQTMLFSATMPPRIEAIARKHLRAPATVRVSQE
PVAPGQMPKVKQVAYLVPRQYKLATLVRVLDVEAPAAALVFCRTRTEVDELTETLAARGY
RPEALHGGLSQEHRDRVMRMFRSGTVDLLVATDVAARGLDVEHLTHVVNFHIPAEVETYV
HRIGRVGRAGREGTAITLAEAKEHRLLKNIERVTNRKIEVGRVPTVADLKARRMELTRQA
IREVIEGGETDQFRVIVETLSAEFDVVDIALAAVKLAHDAETGDAKDAEVEIPAPPPLRE
RFPAPPRPQRFDGPRQGAPFYPQGAPPFRQEPGGPPRPNPRRGDGGPPTARLFFSLGREA
GILPRDLVGAIANTAGVPGQDIGAIEVTDRFSLVEVPEDAADYVVECMQGVRLRGRPVMC
RRDQREGGGGGGGFRPGPAPGGPAGFRPGGGYRPAGGGGFGGPPPGGGGFGGPPPRGGFG
GPRPRPWAEDEE
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaccccgaacccacgccccccgccgagcccgcggtgccgccggagccggcagcg
gtcgagccgccgaagcccgaacccgtcgccgagtcgaagttcgccggcctcgggctcgac
gcgaagttgctcgccgcgctcaccgtcctcgggtacgaggagccgacgcccatccagagg
gaggcgatcccgctcgtcctccaggggaccgacatcgtcggcctcgccgccaccggcacc
ggcaagacggccgcgttcgccctgccgctcattcagcgcctcgcagccaacacctccaag
gtgaagcccgccgccctcatcctcgtgccgacccgcgagttggcgatgcaggtggccgaa
gccgtgcacaagtacggccggccgtacagcacccgcgtgctgcctgtgtacggcggtgcc
gccatgggccagcaggcccgcgcgctcgaccgcggcgtcgacgtcgtggtcgccacgccc
ggccgcgccctcgacttccttcgccgcgggaccctcaagctcgccggcgtgtcggtcgtc
gtgctggacgaggccgacgagatgctcgacatgggcttcgccgaggacatcgaggcgatc
ctcaacgagacgccgaaggagcggcagacgatgctgttctcggcgacgatgccgccgcgg
atcgaggccatcgcccgcaagcacctccgcgccccggccaccgtccgcgtgtcgcaggag
cccgtcgcccccgggcagatgccgaaggtgaagcaggtcgcctacctcgtgccgcggcag
tacaagctcgccacgctagtccgcgtcctcgacgtggaggcgcccgcggccgcgctcgtg
ttctgccgcacgcgcacggaagtggacgaactgaccgaaacgctcgcggcccgcggctac
cgccccgaggcgctgcacggcggcctgtcgcaggagcaccgcgaccgcgtcatgcggatg
ttccgtagcggcaccgtggacctgctcgtggccaccgacgtggccgcccgcgggctcgac
gtggagcacctcacgcacgtcgtgaacttccacatcccggcggaggtggagacctacgtc
caccgcatcggccgcgtgggtcgggccggccgcgaggggaccgcgatcaccctggccgag
gcgaaggagcaccggctgctgaagaacatcgagcgggtgacgaaccgcaagatcgaggtc
ggccgcgtgccgaccgtggccgacctgaaggcccgccgcatggaactgacccgccaggcg
atccgcgaagtcatcgaaggcggtgagacggaccaattccgcgtgatcgtcgagacgctg
tcggcggagttcgacgtcgtggacatcgcgcttgcggccgtgaagctggcccacgacgcc
gagacgggtgacgccaaggacgcggaggtggagatccccgccccgccgccgctgcgggag
cgcttcccggcgccgccgcggccgcaacgcttcgacgggccgcggcaaggcgccccgttc
tacccgcagggggcgccgccgttccggcaggagccgggcgggccgccgcggccgaacccg
cgccgcggcgacggcggcccgccgacggcccggctgttcttcagcctcggccgcgaggcg
ggcatcctgccgcgcgacctggtgggggcgatcgccaacaccgcgggcgtgccgggtcag
gacatcggcgcgatcgaggtaacggaccgcttctcgctggtggaggtgccggaggacgcg
gccgactacgtggtcgagtgcatgcagggggtgcggctgcgcggccggccggtgatgtgc
cgccgcgaccagcgtgagggtggcggtggtggtggcggtttccgccccggccccgctccg
ggcggccccgccggcttccggccgggcggcggctaccggcctgcgggtggcggcgggttc
ggcggcccgccgccgggtggtgggggcttcggcggtccgccgccgcgcggcggcttcggc
ggcccacgcccgcggccgtgggcggaagacgaagagtaa
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