Urbifossiella limnaea: ETAA1_57930
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Entry
ETAA1_57930 CDS
T07028
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
uli
Urbifossiella limnaea
Pathway
uli03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
uli00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ETAA1_57930 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
uli03019
]
ETAA1_57930 (rhlE)
Enzymes [BR:
uli01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ETAA1_57930 (rhlE)
Messenger RNA biogenesis [BR:
uli03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ETAA1_57930 (rhlE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QDU23785
UniProt:
A0A517Y1Z8
LinkDB
All DBs
Position
complement(7011253..7012611)
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AA seq
452 aa
AA seq
DB search
MLFTTLGLHPSLVRAVRALGYAEPSPVQAGAVPPALAGRDVLATAPTGTGKTAAFMLPLL
HRLLAGPRGGPRALILSPTRELAEQIEAVARDLGRYTDLRPALIVGGRPIGPQEKALRAG
PDIVVATPGRLLDLIRQGAARLDRVAALVLDEADRMLDMGFLPDVKRIVARLPAREQTLL
FSATLPPVIAGLAAELLRNPAAVQVGRRTAAAVGITQAAYPVPGHLKTALLRHLLRGTEM
PSVLVFTRTKHGAKKLARVIEADGFTVGELHSNRSPGQRTTAMNGFRRGAFQVLVATNIA
ARGLDVDHVTHVVSTDVPDVPEDYVHRVGRTGRAGATGDAFVLVSPDEEAALGRIERQLG
QRLPRVTLPDFDYRQAAAPGAASDGDRPRGRGGPGRARPPAGPGGGPKRSRGGKPSSDGT
GGGRPPTGGRAPTGGRAGPMKPSGPPKPRRRK
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgctgttcaccaccctgggcctccacccgtccctcgtccgcgccgtccgggccctcggg
tacgccgagccgagccccgtccaggccggggccgtcccccccgccctcgccggccgcgac
gtcctcgccaccgccccgaccgggaccggcaagaccgccgccttcatgctcccgctcctg
caccgcctcctcgccgggccgcggggcggcccccgcgccctcatcctgtccccgacccgc
gagctggccgagcagatcgaggccgtcgcccgcgacctcggccggtacaccgacctgcgc
ccggcgctgatcgtcggcggccgcccgatcggcccccaggagaaggcgctgcgggccggc
cccgacatcgtcgtcgccacccccggccggctcctcgacctcatccgccagggggccgcc
cgcctcgaccgggtcgccgccctcgtcctcgacgaggccgaccggatgctcgacatgggg
ttcctcccggacgtcaagcggatcgtcgcccgcctcccggcccgggagcagacgctcttg
ttctccgccaccctcccgccggtcatcgccggactggccgcggaactcctgcggaacccg
gcggccgtgcaggtcgggcggcggacggcggcggcggtcgggatcacgcaggcggcgtac
ccggtccccgggcacctcaagacggccctcctccggcacctgttgcgggggaccgagatg
ccgtcggtgctggtgttcacccggaccaagcacggggcgaagaagctcgcccgggtgatc
gaggcggacgggttcacggtcggcgagctgcacagcaaccgctccccgggccagcggacg
acggcgatgaacggcttccggcggggcgcgttccaggtgctggtggcgaccaacatcgcc
gcccgcgggctggacgtggaccacgtcacgcacgtcgtcagcaccgacgtcccggacgtg
ccggaggactacgtccaccgggtcgggcgaacgggccgggcgggggcgacgggggacgcg
ttcgtgctggtgtcgccggacgaggaggcggcgctggggcggatcgagcggcagctgggg
cagcggctgccgcgggtcaccctcccggacttcgactaccgccaggccgcggcgccgggg
gcggcctcggacggcgaccggccgcggggtcggggcggccctgggcgggcgcggccgccg
gcggggccggggggcggcccgaagcggtcgcggggtgggaagccgtcctcggacggcacg
ggcggcgggcggccgccgacgggcgggcgggcgccgacgggcgggcgggcggggccgatg
aagccgtccggcccgcccaagccccgccgtcggaagtga
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