Mycosarcoma maydis: UMAG_03863
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Entry
UMAG_03863 CDS
T01021
Name
(RefSeq) putative DNA-directed RNA polymerase II core subunit RPO21
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
uma
Mycosarcoma maydis
Pathway
uma03020
RNA polymerase
uma03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
uma00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
UMAG_03863
09124 Replication and repair
03420 Nucleotide excision repair
UMAG_03863
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
uma03021
]
UMAG_03863
03400 DNA repair and recombination proteins [BR:
uma03400
]
UMAG_03863
Enzymes [BR:
uma01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
UMAG_03863
Transcription machinery [BR:
uma03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
UMAG_03863
DNA repair and recombination proteins [BR:
uma03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
UMAG_03863
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
23564206
NCBI-ProteinID:
XP_011390291
UniProt:
A0A0D1C3I0
LinkDB
All DBs
Position
10:664332..669963
Genome browser
AA seq
1774 aa
AA seq
DB search
MSAQAGQSFAHSTAPIRPVREVQFGILSPEEIRAISVCKVEIPEIKDEAGKPRIGGLSDP
RLGTLDRNYKCQTCGEGHQECPGHFGHIDLAKPVFHIGYLGKVKKILECVCFHCGKLKAD
TVTDPVFDQIVKATRGSKKRRFQRVWEYCSKKMICEADDPKDEDEMGFDEQNKPGHGGCG
RVQPNIRREGLKLFTQWKKGKGEDEDGEENAIAQAEKRPLPASEAHTILKKMSSHDIAVL
GLSEENARPDWMVLTVLPVPPPPVRPSVQDGGEDDLTYKLADVIRANATLKKMEQEGTPA
HILADFEQLLQFHCATFMDNDIAGQPQAMQSSGRPIKSIRARLKGKEGRLRGNLMGKRVN
FSARTVITGDPLLELDEVGVPKSIARNLTYPERVTPYNRAWLSELVRNGPNDYPGAKYVI
RDTGERIDLKYNRRSDMALQPGWIVERHLKDGDYILFNRQPSLHKMSMMSHRIKLMDYST
FRLNLSVTPPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQIVSPQANKPVMGIVQDT
LCGIRKFSLRDCLLDYQQVQQVLLWVADWDGVVPMPCILKPKPYWSGKQILSMCIPKGIN
VFLDKDKGLKNNFLKDDGVYIENGEIMYGVINKKVVGASAGGLIHIIFREKGPVVCKRFF
SGVQRVVNFWLLHNGFSIGIGDTVADKATTDSINQTIAAAKAAVMDYIKYARHDWLKVEA
GMTLRESFEANVNRVLNQARDDVGNHAETSLPDFNNVKQMVVSGSKGSFINISQMSACVG
QQSVEGKRIPFGFRHRSLPHFTKDDFTPESRGFVENSYLRGLTAQEFFFHAMAGREGLID
TAVKTAETGYIQRRLVKALEDVMVCYDGTVRNSTNNVIQFAYGEDGIDGAQVETQTLLTL
KLNDADFRHMFRVDLHDGGFKKGTLRPGLGDWSQELQDLLDEEFAQLEFDRNLLRHEIFQ
SDQVQVRLPMNVARLVLNAQQIFHVDPRKPTDLSPAEVIIGLRNVLDRLIVIRGDDPISR
EAQMNATLLFKIHLRSYLCSKMVIEQHHINKEAWEWILGEIEGQFARSVANPGEMCGTLA
AQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINCAENIKTPSVTVYLTEQYSQSQ
ESAKVIQTALAHTTLQTVTSAVEVHYDPDPSATVIEEDKDFVEAFFAIPDEEVEASLERQ
SPWLLRLELDRAQMLDKNLTMADVASKISAMFGQDIFVMHSEDNAENLILRIRVVDNDPE
KEAQGEEEIFLKNLASQMLAEIDLKGIKGIRKVYIVQQDNKTRRVDPITGDWRTVSEWVL
ETDGSNLAEVLAVEGVDAIRTSCNNPVEVFRVFGIEAARNSLLRETRAVIEFDGSYVNYR
HLALLCDIMTSQGALMAITRHGINRTNQGALMRCTFEETVELLIEAASMGDVDDCKGVAQ
NVLLGQMAPMGTGAFDLNLDLEMLKDTIVNHALPYDTLLASRSLDAAGGKTPGAMTPYDS
SSPASDDAFRVHEQAMFSPLAQTGGDEGGYNDYLLSGTSPMRTPLGAQSPAGYGFSPVSP
GYVPTSPGYATSPAGALGGMSPWTGNMGATSPAYSPTSPRIFGGATSPSYSPTSPSYSPA
SPNYSPSSPAGAGYSPSSPAGRYGAATSPQYSPASPKFSPTSPNYSPASPAYTPTSPVYS
PTSPAMAGRGGGKGFSPTSPAYSPTSPQYSPASPAFSPTSPQYSPASPQYSPTSPQYSPT
SPAMGMGGASAGGPGAAAASLRRSRMSNKPAWQR
NT seq
5325 nt
NT seq
+upstream
nt +downstream
nt
atgagcgctcaggcaggtcaatctttcgctcactcgactgcacccatccgccccgtgcgc
gaggtgcagttcggtattctgagtcccgaagagattcgagccatttcggtgtgcaaagtc
gagatccccgaaatcaaagatgaagctggaaagccaaggatcggcggcctctcggatccg
cgcctcggtacgctcgataggaattacaagtgtcagacctgcggtgaaggccaccaagag
tgtccaggccatttcggtcacattgaccttgccaaacccgtctttcacattggctacctc
ggcaaggtcaaaaaaatcctcgagtgcgtctgcttccactgcggtaagctcaaggccgac
accgtcacagatcccgtctttgaccaaatcgttaaggccacccgcggcagcaaaaagcgt
cgcttccagcgcgtttgggagtactgctccaagaagatgatctgcgaagctgacgatccc
aaggatgaagacgagatgggctttgacgagcagaacaagcccggtcacggtggatgcggt
cgtgtacagcccaacattcgtcgcgagggcctcaaattgttcacccagtggaaaaagggc
aagggcgaggacgaggacggcgaggagaacgccatcgctcaagccgaaaagcgacccctg
cccgcttccgaagcacacaccatcctaaaaaagatgtcgagtcatgacattgccgttctt
ggtctgtccgaagaaaacgcccgccccgactggatggtcctcaccgtacttcccgtcccg
ccaccgcccgtccgtccctcggtgcaagatggaggcgaggacgatttgacatacaagctc
gccgatgtcatccgtgccaacgctacactcaaaaaaatggaacaagaaggaactccggcg
cacatcttggccgactttgagcagcttctccagttccactgcgccacctttatggacaac
gacattgctggccagcctcaggcgatgcagtcgagcggcagacccatcaagtcgatccgc
gcgcgtctaaagggaaaggagggtcgactgcgtggaaacctgatgggtaaacgtgtcaac
ttttcggcacgaaccgtcatcactggtgacccgcttctggagctcgacgaggtcggtgta
cccaagtcgatcgcccgcaatctcacctatcccgagcgtgtcactccttacaacagggcc
tggctctccgaattggtgcgtaacggtcccaacgactatcctggtgccaagtacgtcatc
cgcgacacaggcgagcgcatcgacctcaagtacaaccgacgcagcgacatggcgctacag
cccggttggatcgtcgagcgccacctcaaggatggagattacatcctcttcaaccgtcag
ccatctttgcacaagatgtcaatgatgtcgcatcgcatcaagctcatggactactccacc
ttccgtctcaacctcagtgtcacgcctccctacaacgccgactttgacggtgacgagatg
aacttgcacgtgccacagagtgaagagacccgtgccgagctctcgcagatcgcctgggtc
ccgcgccagattgtctcgcctcaggccaacaagcccgtcatgggcattgtgcaggacacg
ctctgcggtatccgcaagttttccctgcgagactgcctcctcgactatcaacaggtacag
caggttctgctctgggtcgccgattgggatggcgtggtgcccatgccgtgcatcctcaag
cccaagccgtactggtccggaaagcagatcctgtccatgtgcatccctaaaggtatcaac
gtcttcttggacaaggacaagggtctgaagaacaatttcctcaaagacgacggtgtctat
atcgaaaatggtgagatcatgtacggtgtcatcaacaaaaaagtcgtcggcgcctcggcc
ggtggtctcatccacattatcttccgagaaaaaggtcccgtcgtctgcaagcgcttcttc
tctggtgtgcagcgcgtcgtcaacttctggcttttgcacaacggtttctccatcggtatc
ggagacacggtcgccgacaaggccaccacagacagcatcaaccagaccatcgctgccgcc
aaggcggccgtcatggactacatcaagtatgcaaggcacgactggctcaaggtcgaggct
ggtatgacgttgcgagagtcgttcgaagccaacgtcaaccgtgtgctcaaccaggcgcgt
gacgacgtcggcaaccatgccgaaacaagcttgcccgactttaacaacgttaaacagatg
gtggtctctggatccaagggctcctttatcaacatctcgcagatgtcagcctgtgtcggc
cagcagtcggtcgagggtaaacgtattccgttcggtttccgccatcgcagtctgccgcat
ttcaccaaggacgacttcactcccgagtctcgcggtttcgtcgaaaactcgtacctccga
ggtctcacggctcaagagttcttctttcacgccatggctggtcgagaaggtctcattgat
acagctgtcaagaccgccgagacgggttacattcagcgtcgtttggtcaaggcgcttgag
gatgtgatggtctgctacgacggcaccgtccgaaactctaccaacaacgtcatccagttt
gcctacggtgaagacggcatcgacggtgcccaggtcgagacgcagacgctcttgacactg
aagctcaacgatgccgatttccgccacatgttccgtgtcgacttgcacgatggcggcttc
aagaagggcacgcttcgtcccggtctcggtgactggtcacaagagctacaggacctcctt
gacgaggaatttgcccagctcgagttcgaccgtaacctgctccgtcacgagatcttccag
tccgatcaggtgcaagttcgtctgcccatgaacgtggcccgtctggtgctcaacgcgcag
cagatcttccacgtcgacccgcgaaaaccgacggatctctcgcccgccgaggtcatcatc
ggcctgcgcaatgtgcttgaccgcctgattgtcattcgcggcgacgatcctatctcacgc
gaggcccagatgaacgcgacgctgctcttcaagattcacctgcgttcttacctttgctcc
aagatggtcatcgagcaacaccacatcaacaaggaggcttgggaatggatccttggcgag
attgagggccaatttgcccgttcggtggccaacccaggtgagatgtgcggcaccctggct
gcacagagtatcggagagcccgccactcagatgacgctcaacacgttccactatgccggt
gtgtcgagtaagaacgtcacgctcggtgtgccgcgtctcaaggagatcatcaattgtgcc
gaaaacatcaagacaccttcggtgacggtctacctgaccgagcagtacagccagtcacag
gaatcggccaaggtgatccaaaccgcgctggcgcacacgaccctgcaaacggtcacctcg
gctgtcgaggtccactacgacccggatccgtcggctactgtgattgaagaggacaaggat
ttcgtcgaagccttctttgcgattccagacgaggaggtcgaggcgagtctggagcgtcaa
tcgccgtggctcttgcgactggagctcgaccgtgcccagatgctcgacaagaacctcacc
atggctgatgtggcttccaagatcagcgccatgtttggacaggatatctttgtgatgcat
tcagaagataacgccgaaaacctcattctgcgtatccgtgtggtcgacaatgaccccgag
aaggaggctcagggagaagaggagatcttcctcaagaatcttgcctcgcagatgctggcc
gagatcgacctgaaaggtatcaagggtatcaggaaggtctacattgtgcaacaagacaac
aagacgcggcgcgtcgaccccatcaccggtgattggcgcaccgtgtccgaatgggtgctt
gagaccgacggaagcaacctcgccgaggtgctcgcggttgaaggtgttgacgccatccga
accagctgcaacaacccagtcgaggtgttccgcgtttttggtatcgaggctgcgcgaaac
tcgctgcttcgggagacgcgtgcggtcatcgagtttgacggttcgtacgtcaactaccgt
cacttggcgttgctctgcgatatcatgacgagccagggtgccttgatggccatcactcgt
cacggtatcaaccgaaccaaccagggtgctctgatgcgctgtacgttcgaagagactgtc
gaactgttgatcgaggcagcgtcgatgggtgacgtcgacgactgtaagggtgttgcgcag
aatgtattgctgggccagatggcgcccatgggtacgggcgcgttcgacctcaacttggat
ctagaaatgctcaaagacaccattgtcaaccacgcgctgccgtacgacacgttgctggcc
tctcgttccctcgacgcggccggtggcaagacaccaggagccatgacaccgtacgattcg
agctcgccagcgtcggacgatgccttccgcgtgcacgagcaggccatgttcagtccactt
gcgcagacgggtggcgacgaaggaggctacaacgactatctgttgtccggaacgagtccc
atgcgcacgccgttgggagcacagagtcctgccggatatgggttttcgcctgtctcgcct
ggctacgtgcccacttcgcctggttatgccacatcgcctgccggcgctctgggcggcatg
agtccgtggacaggcaacatgggcgccacttcaccagcctacagccccacttcgccgcgc
atctttggcggagccacgagtccatcctactcgcccacctcgccgagctacagtccggca
tcgcccaactactcgccttcgagtccggcaggtgcaggctattcgccttcgagtccagcg
ggtcggtatggtgcggcgacgagtcctcagtactcgcctgcttcgcccaagttttcgccg
acgagccccaactacagccctgccagtccagcgtacacgccgacttcgccggtgtactcg
ccgacgtcgcctgctatggcgggtcgaggcggtggcaagggattcagtccgacgtcgccg
gcttactcgccgacgtcgccgcagtattcgcctgcttcgcctgcgttctcgcccacttcg
ccacagtactcgccggcgtcacctcagtactcgccgacatcgccgcagtattcaccgacg
agtccggcgatggggatgggcggcgcgtcggcgggaggtcctggagcagctgcggcatca
ctgcgtcgcagtcgcatgtcaaacaagccggcttggcagcgttga
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