Mycosarcoma maydis: UMAG_04069
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Entry
UMAG_04069 CDS
T01021
Name
(RefSeq) putative TFIIH/NER complex ATPase/helicase subunit SSL2
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
uma
Mycosarcoma maydis
Pathway
uma03022
Basal transcription factors
uma03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
uma00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
UMAG_04069
09124 Replication and repair
03420 Nucleotide excision repair
UMAG_04069
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
uma03021
]
UMAG_04069
03400 DNA repair and recombination proteins [BR:
uma03400
]
UMAG_04069
Enzymes [BR:
uma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
UMAG_04069
Transcription machinery [BR:
uma03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
UMAG_04069
DNA repair and recombination proteins [BR:
uma03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
UMAG_04069
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
SNF2-rel_dom
DEAD
AAA_34
Motif
Other DBs
NCBI-GeneID:
23564354
NCBI-ProteinID:
XP_011390507
UniProt:
A0A0D1CMZ9
LinkDB
All DBs
Position
11:612154..614976
Genome browser
AA seq
940 aa
AA seq
DB search
MSANDQGSRPRLTVKLRPSLNAASNGSHTPTSATASQTQSFRNTPAAYRDDDDEDDGEQA
FALDDGFVSEDSGDDYGTSSKKAGKTKASNKPKANDSARSAPTTAIARQHPLSGAAPRFN
GPAMDEDDEQAHFESGELRFHTRDFTKMPLKLDHASRPLWISPDDGHIILEGFSPLAEQA
QDFLIAIAEPVSRPAYIHEYKLTPYSLYAAVSVGLQPDDIIEVLNRLSKVPVPDAVLEFI
REYTASFGKIKLVLKQNKYFVESAHPEILQTLLRDSIIGTARVREDPNAAKSGRMEVLGK
TQAPTRGDLVIPGTESAARKARQAAAAAGQTPGASNGGRSAGATGSGASGPAPENAEAAR
REDEADLFSAIIGVDEADELDEDDTVHSFEIAEEYIEQVKKRCNEIGYPMLEEYDFRNDQ
LNADLEIDLKPITHIRPYQEKSLAKMFGNGRARSGIIVLPCGAGKTLVGITAACTIKKSC
LVLCTSSVSVMQWRQQFLQWSNIQDNQISVFTADQKEKFSGASGIVVSTYSMVANTGKRS
HTSQKMMNFLESREWGFILLDEVHVVPASMFRRVLTKIKAHSKLGLTATLVREDEKIDEL
NFLVGPKLYEANWMDLAAKGHIATVQCAEVWCPMTPEFYREYLREKSRKKMLLYCMNPNK
FQACQFLIDYHENRGDKIIVFSDNVYALVAYAHKLKKPFIHGGTAHLERMRILQNFQHNP
LVNTIFLSKVGDTSIDLPEATCLIQISSHFGSRRQEAQRLGRILRAKRRNDEGFNAFFYS
LVSKDTAEMFYSTKRQQFLIDQGYAFRVITHLVGMTDMPGLVYKSQAEQIELLQSVLIAN
ESDADLGSDLAGTEFGGVVRRGGTGTGTGTGTSAGALLNGSTVAKASRTTGSLNALSGAQ
HMSYIERNRSVNKTLNKEQGRHKMFQKRADKAKRKNMDDE
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atgtcagccaatgaccagggctctcggccgcgtttgacggtcaaattgcgacccagctta
aacgcagcgagtaacggatctcatactcctacctctgccacggcttctcaaacacagagc
tttcgcaacacgccagcggcgtatcgtgacgatgacgatgaagatgacggggagcaagca
tttgctctggatgacggctttgtctcggaggactctggcgacgattacggcacgagcagc
aagaaggccggcaagacaaaagcatcaaacaagccaaaggccaatgatagcgctcgatca
gctccaaccaccgccatcgctcgacagcatcccctgtcaggtgctgcgcctcgcttcaac
ggccccgccatggacgaagacgacgagcaggcacactttgaatctggcgagctgcgcttc
cacacgcgagactttacaaagatgccactcaagctggatcatgcaagccgtcctctttgg
atctcgcctgatgatggccatatcatcttggaaggctttagcccactagctgagcaggcg
caggactttctgatcgcgattgccgagccggtgagtcgaccagcgtacattcacgaatac
aaactcacgccgtattcgctctacgccgcggtctcggttggtttgcagcctgacgacatt
atcgaagtgctcaatcgactctccaaggtgccggtcccggacgcagtgctcgagtttatt
cgcgagtataccgccagtttcggcaagatcaagctcgtgctcaagcagaacaagtatttt
gtcgagagtgcgcacccagagatccttcagacgcttctgcgggatagcatcattggcaca
gctcgggttcgcgaggatccgaacgctgccaagtccggacggatggaggtattgggcaag
acgcaagcacccactcgcggcgacctggtgattccagggacggaaagcgcggcgaggaag
gcacgacaggcggctgctgcggctggtcagacacctggcgcatctaatggtggtcgttcg
gcaggcgcgacgggttcaggagcttctggtcccgcacctgagaatgcagaagcggcgcgg
agagaagacgaggcagatctgttctctgctatcatcggtgtagacgaggccgacgagctg
gacgaagacgatacggtgcacagctttgagattgccgaagagtatatcgagcaggtcaag
aagcgctgcaacgagatcggatacccgatgctggaagagtacgattttcgcaacgatcag
ctgaatgcggacctcgagatcgatctgaagccgatcacacatatccgaccgtaccaagaa
aagagtctggccaagatgtttggtaacgggcgtgcgcggagcggaatcattgtgctgccg
tgcggtgccggtaagacgctggtgggcattacggcggcgtgtaccatcaagaagagctgt
ctggtgctgtgcacgagcagtgtgagtgtcatgcagtggagacagcagttcttgcagtgg
agcaatatccaagacaaccagatcagcgtgtttaccgccgatcaaaaggaaaagttttcg
ggcgcgtccgggattgtagtgtcgacgtattcgatggtggccaatacgggcaagcgctcg
cacacatcgcaaaagatgatgaactttttggaaagccgagagtggggatttatcctgctg
gacgaggtgcacgttgtacctgcgagcatgttccgacgcgtgctgaccaagatcaaagcg
cattccaagctcggcttgacggcgacgctggtgcgcgaggacgagaagattgacgagctg
aatttcctcgtggggcccaagctgtatgaagcgaactggatggacttggcagccaagggg
cacattgccactgtacagtgtgctgaggtatggtgtccgatgacgcccgagttctaccgc
gagtacctgcgcgagaagagccgcaagaagatgctgctctactgtatgaacccaaacaag
ttccaggcgtgtcagttcctgatcgactaccacgagaaccgcggtgacaagatcattgtg
ttttcagacaacgtgtacgcgctcgtggcgtatgcgcacaagctcaaaaagccgttcatc
cacggcggtaccgcgcacctggaacgcatgcgcattctgcagaacttccaacacaatccg
ttggtgaatacgatcttcctctcgaaggtgggcgatacatcgatcgatctaccggaagcg
acgtgtctgatacagatctcgtcgcactttggttcacgaagacaagaagcgcaacgacta
ggacggatcctgcgcgccaagaggcgaaacgacgagggcttcaatgcgtttttctacagt
ctcgtaagcaaggataccgccgagatgttctactcgactaagcgacagcagttcctgatc
gatcaggggtatgcgtttagagtcatcacacacctcgtcggtatgaccgacatgcccggt
ttggtgtacaagagtcaggccgagcagatcgagctcctacagagcgtgctgatcgccaac
gagtcggatgcggatctcggatctgatctggcaggcaccgagtttggcggtgtggtcaga
cgcggtggcaccggcaccggcaccggcaccggcacatcagcaggagcattgttgaacggc
agcactgtggcaaaggcttcgagaaccacaggctcactcaacgcgctcagtggtgcacag
cacatgtcgtacatcgaacgcaaccggtcggtcaacaagacgctcaacaaggagcaaggc
cgacacaagatgttccagaaaagagctgataaggcgaagcgtaagaacatggacgacgaa
tga
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