Mycosarcoma maydis: UMAG_06129
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Entry
UMAG_06129 CDS
T01021
Name
(RefSeq) putative ATP-dependent RNA helicase
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
uma
Mycosarcoma maydis
Pathway
uma03013
Nucleocytoplasmic transport
uma03015
mRNA surveillance pathway
uma03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
uma00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
UMAG_06129
09122 Translation
03013 Nucleocytoplasmic transport
UMAG_06129
03015 mRNA surveillance pathway
UMAG_06129
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
uma03019
]
UMAG_06129
03041 Spliceosome [BR:
uma03041
]
UMAG_06129
03009 Ribosome biogenesis [BR:
uma03009
]
UMAG_06129
03012 Translation factors [BR:
uma03012
]
UMAG_06129
Enzymes [BR:
uma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
UMAG_06129
Messenger RNA biogenesis [BR:
uma03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
UMAG_06129
mRNA cycle factors
Stress granule specific factors
UMAG_06129
Spliceosome [BR:
uma03041
]
Complex C
Other components
EJC/TREX
UMAG_06129
Ribosome biogenesis [BR:
uma03009
]
Eukaryotic type
90S particles
Helicases
UMAG_06129
Translation factors [BR:
uma03012
]
Eukaryotic type
Initiation factors
eIF-4
UMAG_06129
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
UvrD-helicase
AAA_19
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
23565823
NCBI-ProteinID:
XP_011392473
UniProt:
Q4P184
LinkDB
All DBs
Position
21:complement(427454..428647)
Genome browser
AA seq
397 aa
AA seq
DB search
MSGGINAGDSKLAFESSEHVKVATTFDAMGLKEDLLRGIYAYNFEKPSAIQQRAILPIIR
GRDVIAQAQSGTGKTATFSISMLQSIDTTLRETQALVLSPTRELAIQIQSVVLALGDYLN
VQCHACIGGTSVGEDIRKLDYGQHIVSGTPGRVYDMIRRRHLRTKNIKMLILDESDELLN
MGFKDQIYDVYRYLPPSTQVVLLSATLPQDVLEMTSKFMTDPVRILVKRDELTLEGIKQF
FVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLSAKMKENNFQVSSMHGEMQQK
ERDEVMAEFRQGSSRVLITTDVWARGIDIANISLVINYDLPTNRENYIHRIGRSGRFGRK
GVAINFVTVDDVRTLRDIEQFYSTQIDEMPVKLEDML
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtccggtggtatcaatgcaggcgacagcaagctcgcctttgaaagctctgagcacgtc
aaggtcgcaaccactttcgatgccatgggtttaaaggaagatctgcttcgtggcatctat
gcgtacaattttgaaaaaccctcggcgatccagcaacgagcgatcctgcccatcattcga
ggtcgcgatgtcatcgcacaggctcaatcaggaacgggcaaaaccgccacgttcagcatc
tcgatgctacaatctatcgacacaaccctcagagaaacacaagccctggtactcagtcca
acgcgcgaattggccattcagatccagtcggtcgttcttgctctcggagactacttgaac
gttcaatgtcacgcatgcattggcggtaccagcgtaggcgaagacattcgaaaactcgac
tacggtcaacacattgtctctggtacgcccggtcgagtctatgacatgattcgacgtcga
catttgcgcacaaaaaacatcaagatgctcatccttgacgaatctgacgaactgctcaac
atgggcttcaaggatcagatttacgacgtttaccgttacctgccaccttcgacccaagtc
gtgctcctctcggccactttaccgcaagatgtgctcgagatgacctccaagttcatgact
gatcccgtccgcatcctagtcaaacgtgacgaattgactttggaaggcatcaaacaattt
ttcgtcgctgtcgaaaaggaagaatggaagttcgacaccctctgtgatctctacgacacc
ctcaccatcacacaagccgtcatcttttgcaacacgcgacgcaaagtggattggctctcg
gccaaaatgaaagagaacaactttcaggtgagcagtatgcacggagagatgcagcaaaag
gaaagggatgaagttatggccgagttcagacagggcagctccagggtgttgatcaccacg
gatgtatgggcgagaggtatcgatatcgccaacatctcgttagtcatcaactatgatctg
cctaccaacagggaaaattacatccacagaattggtcgaagtggaaggttcggcaggaag
ggtgtagctatcaatttcgttaccgtggacgacgtcagaaccttgagggatatcgaacag
ttttactccactcagatcgatgagatgcctgtcaagctggaggacatgttgtga
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