Mycosarcoma maydis: UMAG_06296
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Entry
UMAG_06296 CDS
T01021
Name
(RefSeq) putative TFIIH/NER complex subunit protein
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
uma
Mycosarcoma maydis
Pathway
uma03022
Basal transcription factors
uma03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
uma00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
UMAG_06296
09124 Replication and repair
03420 Nucleotide excision repair
UMAG_06296
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
uma03021
]
UMAG_06296
03400 DNA repair and recombination proteins [BR:
uma03400
]
UMAG_06296
Transcription machinery [BR:
uma03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
UMAG_06296
DNA repair and recombination proteins [BR:
uma03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
UMAG_06296
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Glyco_hydro_97
Motif
Other DBs
NCBI-GeneID:
23565933
NCBI-ProteinID:
XP_011388300
UniProt:
A0A0D1CUU7
LinkDB
All DBs
Position
4:complement(670070..671545)
Genome browser
AA seq
491 aa
AA seq
DB search
MASQRHTPGPGQGLTSTAKGGTNTALAISEHSRAAGIGAETIDDFLDRQPRSVLIRLYQK
PASCLAIFRLLPMMARQLIMHMLFLDVPLAADDFLAWIKKEVKNEFDAAVDKLSRLSIIQ
LKASAGKQMLLLNAGFTEGMRRALTGGGKHRSFGVPCDTEDKNAVDVAFLDQYARTKWET
ILHYMVGSDNSSTPREPVLYLLRRSNLMQPRTASSSNGGLNITSRGFQFLLEDVNTQLWD
LLLQYLDMAEERNMDLVEVLAFLFMLGSLELGRDYSTEELPETQLHMLEDFRDYGLVYQR
KASSRRFYPTRLATTLTSSAAVPLLSSNGTEQEERGYIILETNYRLYAYTSNPLRVAVLS
LFVTIKARFPNLVVGSITRDSVKSALANGITAEQIITYLTHHAHLQMHRNDPLLPVTVSD
QIRLWEREKNRVQQNLGSLFTDFTSQFDFEEVRNYAKQLGVLVWQDEEKRRFFVDEAGNE
PVRDYIRRRRA
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atggcgagccagcgacatacaccagggcctggccaaggactcacatccacagccaaagga
ggtaccaacactgcgcttgccatttctgaacactcgagagcagctggcattggagctgaa
accatcgacgactttttggaccggcaacctcgatccgtgctcatccgtctctaccagaaa
ccagcatcctgtctcgctatcttccgactgctccccatgatggcgcgccagctcatcatg
cacatgctctttctggatgttccgctggcagcagacgacttcttggcgtggatcaaaaag
gaggtaaaaaatgagtttgatgctgctgtcgacaagctctcccgtctgtccatcatacag
ctcaaggcatcggcgggcaagcagatgctactgctcaatgccggcttcactgaaggaatg
cgaagagccttgacgggcggaggaaaacatcgatcttttggtgtaccctgtgatacagaa
gacaagaatgcggtggatgtggcttttctggatcagtatgctcgcacaaagtgggaaacg
attctccattacatggttggcagcgataactcgagcactcctcgtgagcccgtgctctac
cttttacgtagaagcaatctcatgcagcctagaaccgcctcgagctcgaatggaggactc
aacatcactagccgtggattccagtttttgttagaagacgtcaacacacagctgtgggat
ttgctcttgcaatacctcgatatggccgaggagcgaaacatggatctggtcgaggtgctc
gcctttctcttcatgctgggcagcttggagctcggcagagattactcgacagaggagttg
cccgaaacacagctgcacatgctcgaagatttccgcgactacggtcttgtctatcaacgc
aaagcgtcgagccgacgcttttaccctacacgccttgccaccaccctcacttcgtccgct
gctgtacctctgctgtcgagcaacggaacagagcaggaagaacgaggctacatcatcctc
gagaccaactaccgcctttacgcgtatacttcgaacccgctccgagtcgcagtgctgtcg
ctgtttgttaccatcaaggccaggttcccgaatttggtcgttggatccattacgcgtgat
tcggtcaagtcggccctggcaaacggcatcaccgccgaacagatcatcacgtatctcacg
catcacgcacacctccagatgcatcgtaacgatcctctacttcctgtcaccgtgtcggat
cagatcagattatgggagcgcgaaaagaaccgagtccagcaaaacttgggttcgctcttc
accgactttacaagtcaattcgactttgaagaggtgcgcaactacgccaagcagctcggt
gtgctggtatggcaggatgaggagaagagaagattcttcgtggacgaagcgggcaacgaa
cctgtgcgagactatattcgaagaagaagagcgtag
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