KEGG   Mycosarcoma maydis: UMAG_10027
Entry
UMAG_10027        CDS       T01021                                 
Name
(RefSeq) putative non-snRNP spliceosome component required for DNA repair
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
uma  Mycosarcoma maydis
Pathway
uma03040  Spliceosome
uma04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:uma00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    UMAG_10027
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    UMAG_10027
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:uma03041]
    UMAG_10027
   04121 Ubiquitin system [BR:uma04121]
    UMAG_10027
   03400 DNA repair and recombination proteins [BR:uma03400]
    UMAG_10027
Enzymes [BR:uma01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     UMAG_10027
Spliceosome [BR:uma03041]
 Complex B
  Other components
   Prp19 complex
    UMAG_10027
 Complex C
   Prp19-CDC5 complex
    UMAG_10027
Ubiquitin system [BR:uma04121]
 Ubiquitin ligases (E3)
  U-box type E3
   UMAG_10027
DNA repair and recombination proteins [BR:uma03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    UMAG_10027
SSDB
Motif
Pfam: WD40_Prp19 WD40_WDHD1_1st WD40 Prp19 Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_EML ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd WDR55 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd WD40_MABP1-WDR62_1st Beta-prop_WDR19_1st EIF3I NBCH_WD40 Beta-prop_WDR75_1st Beta-prop_CAF1B_HIR1 Beta-prop_NUP159_NUP214 Beta-prop_TEP1_C Beta-prop_SCAP Beta-prop_HPS5 Beta-prop_IFT140_1st Beta-prop_Vps41 WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_NOL10_N zf-Nse DUF1513 U-box
Other DBs
NCBI-GeneID: 23566102
NCBI-ProteinID: XP_011386616
UniProt: A0A0D1E876
LinkDB
Position
1:278780..280689
AA seq 535 aa
MFCAISGEPPKVPVVSRKSGLIYEQRLIHKYINENGKDPVTGDTLELDDLIEIKSSPKTA
VPRPPQHSSIPSLLTSLQNEYDAIILETFTLKKHYDNLRQELAHALYANDASARVIARLL
NERDQAREALASIQGTIGAGPSSSRTAQDVEMSDSAPAENGSAGAAETGGLPKEIVDVID
STAQRLSSQRKAKSKRKAPEGYASQSTVADFVEVQKLPSMHHARPAGVSCIATSADGNVL
VTGGNDKNVQIYDRKEDQVLATLKGHTKRITQVAVSGVSDARIGSEAANDTAALPTYIVS
ASEDGTVKVWQPTGATGAKSQAYALSSTADAHKSEVIGVDIHPSEALYGSAGRDGTISLR
SLPDGTELLHVDPDLGDTYESFAFHPDGQLAATGTSTGAIRIWEVKTGANASTIQTELSG
RVSSLHFSENGYYLAAASDQGKQVEVWDLRKLTAVGKLTVEEEGKTGVSAVKFDPSLQFL
AVATDGVNIYANKSWNHLVKLEGTEKLTGLAWDARDGSVVVSSLDRTVRAFGLAA
NT seq 1608 nt   +upstreamnt  +downstreamnt
atgttctgcgccatctctggtgagcctcccaaggtgccggtcgtgtccagaaagagcggc
ctcatatacgagcagcgcctcatccacaaatacatcaacgagaatggaaaagacccggta
acgggtgataccctcgagttggacgatctgatcgagatcaagtcaagtcctaagacagca
gtgcctcgtccaccacaacacagctcgattccgtccctgctcacgtccttgcagaacgag
tacgatgccatcattctcgaaacattcacgctcaagaagcactacgacaacttgcggcag
gaattggcgcatgctctctacgccaatgatgccagcgcgcgagtaattgcgcgattgctc
aacgagagagatcaggcgcgtgaagctttagcgagcatccagggcaccatcggtgcagga
ccttcttcgtcacgtaccgcgcaagacgtggaaatgtccgactcggcgccggccgaaaat
ggatccgccggtgctgctgaaacaggtggcctgccgaaggagatcgtcgacgtcattgac
tcgaccgctcaaaggctatcttcgcagcgaaaggccaagtccaaacgtaaagcaccggaa
ggatatgcctcgcagagtaccgtggcagactttgtagaggtgcagaagctgccttcgatg
catcatgctaggccagctggcgtctcatgtatcgcaacttccgcggatggcaatgtgttg
gtcaccggcggcaacgacaagaatgttcaaatatacgatcgcaaagaagaccaagtgttg
gcaacgctcaagggccacaccaagcgaatcactcaggttgctgtcagcggcgtctctgac
gcgcgcatcggatccgaagctgccaatgacacggccgcgctaccgacttacattgtttct
gccagcgaggatggtacagtcaaagtgtggcagccgacgggcgcgacgggtgccaagtca
caagcgtatgcgctttcaagcaccgccgatgcacacaagagcgaagtgattggagtcgac
atccacccttcagaagcactatacggatctgctggtcgcgacggcacaatctcgctacgc
tctcttccagatggtaccgaactgctccatgtggatcccgacctgggtgacacttacgaa
tcatttgccttccacccggacggccagcttgctgccactggtacatccacaggcgcgatc
cgcatctgggaggtcaaaacaggcgccaacgcctcgaccatccaaaccgagctatctggg
cgagtctcttcgcttcatttcagcgagaatggctactacctcgctgcagccagcgatcag
ggcaagcaagttgaagtgtgggacttgcgaaaactcaccgctgtcggaaagctgacggtc
gaggaggaaggaaagacgggcgtgtcggcggtcaagtttgacccgtcgcttcagttcttg
gctgtagcaacggatggggtcaatatatacgcaaacaagtcctggaaccatctggtcaag
ttggaaggcacggaaaagttgacagggcttgcttgggatgcgagagacggaagtgtggtc
gtctcgagtctggaccgtaccgttcgcgcgtttggtctcgccgcctga

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