Mycosarcoma maydis: UMAG_10429
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Entry
UMAG_10429 CDS
T01021
Name
(RefSeq) putative DNA-directed RNA polymerase II core subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
uma
Mycosarcoma maydis
Pathway
uma03020
RNA polymerase
uma03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
uma00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
UMAG_10429
09124 Replication and repair
03420 Nucleotide excision repair
UMAG_10429
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
uma03021
]
UMAG_10429
03400 DNA repair and recombination proteins [BR:
uma03400
]
UMAG_10429
Enzymes [BR:
uma01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
UMAG_10429
Transcription machinery [BR:
uma03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
UMAG_10429
DNA repair and recombination proteins [BR:
uma03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
UMAG_10429
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
RNA_pol_Rpb2_45
DUF7129
Motif
Other DBs
NCBI-GeneID:
23566465
NCBI-ProteinID:
XP_011390780
UniProt:
A0A0D1DTZ1
LinkDB
All DBs
Position
12:complement(572250..576082)
Genome browser
AA seq
1241 aa
AA seq
DB search
MADSVAYDKYMKDTFDEGAIDVDDLDVASYNNTYNASKGVDYDDDDNFSEEITQEDCWDV
IRAFFEEKGLVRHQLDSFNEFMSNTIQELVEEVRSLTLEQSDQHSGHAEDKTRRYEIEFG
QIYLNKPTMTESDGSSAQLFPQEARFRNLTYSASLFVDVTQKVLVQSEDEVDLNGDPAWV
PEYGKTDVEEQQIFIGKVPIMLKSDFCWLKGLDDEMSYSLNECPYDAGGYFVINGSEKVL
IAQERMAANHVYVFSKAPPAPVTFLAEIRSAVEKGGKTISTMQVKLFSRNKEKTANNTIR
ATLPYIRNDIPIVIVFRALGIVPDREVLQHICYDFNDTPMLEMLKPCIEEAFVIQDRDVA
LDFIGRRGTTTGLSRAKRTVYAQEILQKEMLPHISTSEGSNTKKAYFFGYMIHRLLLAAL
DRREIDDRDHFGKKRIDLGGPLMANLFRMLFRKVTRDVYRHLQKCVEEHREFHIQAAVKS
STITNGLRYSLATGNWGDQKKAMQAKAGVSQVLNRFAFASTLSHLRRTNTPIGRDGKIAK
PRQLHNTHWGMVCPAETPEGQACGLVKNLSLMATVTVGTPSAPIVEFLEEFGLDSLVDMQ
LAHAKATKIFVNGVWMGTHDDPGQLVDTLRDLRRKDDISHEVSVVRDIRERELRIYTDAS
RVLRPVFIVNPHDMSLLIKKRHVEMIGQPIPETGEEFRWTHLVQEGVIEYLDAEEEESVL
ICMSTTDLEQSREYKARNGQINLNSADPSARLKSVHTIAPDTWTHCEIHPAMVLGICASI
VPFPDHNQSPRNVYQSAMGKQAIGIPISNIQSRADSMAHVLLYPQKPLGTTRSMEHLRFR
ELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFRSMYYRGYMAEEKKVGVMQLEEFE
KPHRDTTIRMKHGTYDKIDADGLCAPGTRVSGDDVIIGKTAPLPPDSEELGMRSKLHTKK
DASVSLKSTENGIIDQVLVTTNSHGNKFVKVRVRSTRVPQTGDKFASRHGQKGTIGITYR
QEDMPFSAEGVTPDIIINPHAIPSRMTIGHLVECLLSKVAALSGQEGDATPFTELTVEAV
SSILRGLGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILT
RQPVEGRSRGGGLRFGEMERDCMIAHGIAGFLKERMFDVSDPYRIHVCDLCGLTALANLK
KGTYECRSCRNRTAISQIHIPYAAKLLMQELMSVNVALRLY
NT seq
3726 nt
NT seq
+upstream
nt +downstream
nt
atggccgactctgtagcctacgacaagtacatgaaggacacctttgacgaaggtgccatc
gacgtcgacgatctggatgtcgccagttacaataacacttacaatgctagcaaaggggtt
gattatgacgacgatgacaatttctcagaagagatcacacaagaggattgctgggatgtc
atccgtgccttcttcgaggaaaagggtctcgttcgccaccagctcgacagtttcaacgag
ttcatgtccaacactattcaggaactcgtagaagaggtgcgcagcctcactctcgagcag
agcgaccagcattccggtcacgcagaggacaagactcgtcgatacgaaatcgagtttgga
cagatctatctcaacaagcctacgatgaccgagtcggacggcagctctgctcagctcttc
ccgcaagaggcgcgtttccgtaacctcacctactcggcttcgctctttgtcgatgtgacg
caaaaggtacttgtgcagagcgaagatgaggtcgatctgaacggcgacccggcatgggtg
cccgagtatggcaagaccgacgtcgaagaacagcagatctttatcggcaaggtgcccatc
atgctcaagtcggacttctgttggctcaagggtctcgacgacgaaatgtcgtactcactc
aacgaatgtccgtacgatgcaggaggatactttgtcatcaatggatctgaaaaggtgctc
atcgctcaggagcgtatggctgccaaccacgtctacgtcttctccaaagcaccgcccgcc
cccgtcaccttcctcgccgagatccgcagtgctgtcgaaaagggtggcaagaccatctcg
acgatgcaggtcaagctgttttcgcgcaacaaggaaaagacggccaacaacaccatccgc
gccacgcttccctacatccgcaacgacattcccatagtcatcgtattccgtgcgctcggc
atcgtgcccgatcgtgaggtgctacagcacatctgctacgactttaatgacacacccatg
ctcgagatgctcaaaccatgcatcgaagaggcgttcgtcattcaggaccgtgacgtcgcg
ctcgactttatcggacgccgtggtaccaccacgggactttcgcgtgccaagcgtaccgtc
tacgcgcaagagatcctacaaaaggagatgcttccgcacatctcgacctcggaaggctcc
aacacgaaaaaggcctacttctttggctacatgatccatcgtctgctgctggctgcgctc
gaccgtcgcgagattgatgaccgtgaccactttggtaagaagcgtatcgatctcggtggc
ccccttatggcgaatctgttccgtatgctgttccgcaaagtcacgcgagatgtgtaccgc
cacttgcaaaagtgtgtcgaggagcaccgcgagtttcacatccaggctgccgtcaagtca
agcacgattaccaacggtcttcgatattcgcttgctaccggtaattggggtgaccaaaag
aaggcgatgcaagccaaggcgggtgtatcgcaggtgctcaaccgtttcgctttcgcctcg
accctctcgcatcttcgccgtaccaacacgccaattggccgtgacggcaagattgccaag
cctcgtcaactgcacaacacgcattggggtatggtgtgccctgccgagacgcccgaagga
caggcgtgtggactggtcaagaacctcagtctgatggctactgtcacggttggcacaccg
tcggcgcccattgtcgagtttttggaagagtttggtctcgacagtctggtggatatgcag
ctggcgcatgccaaggccaccaagatctttgtaaatggtgtttggatgggcactcacgac
gaccctggtcagttggtggacacgctgcgcgatctacgtcgaaaggacgatatctcgcac
gaggtgtcagtggttcgagacattcgagagcgagagcttcgcatttacacggatgcctct
cgtgtgttgcgccccgtgttcatcgtcaatccgcacgacatgagcctgctgatcaagaag
cgacacgtcgagatgattggtcagccgattccggaaacgggcgaagaattccgatggacg
catctggtacaggaaggtgtgattgagtacctcgatgccgaagaagaggagtcggttctc
atctgcatgtcgaccactgatttggaacagtcgcgcgagtacaaggctcgcaacggacag
atcaatctcaactcggctgatccgtcggctcggctcaagtcggtacacacgattgcaccc
gatacgtggacgcattgcgagatccatccggcgatggtgctgggaatctgtgccagcatt
gttcctttcccagatcacaaccagtctccacgaaacgtctatcagagtgcgatgggcaaa
caagctatcgggatccccatctcgaacattcaatctcgtgcagattcgatggctcacgtg
ttgctgtatccgcaaaagccactgggtaccacacgatcgatggagcacctgcgcttccga
gagcttccggcggggcagaacgcgattgtggcgatcatgtgttactcgggctacaatcag
gaagactcggtgatcatgaaccagtcgtcgatcgaccgaggactattccgatccatgtac
taccgtggatacatggcggaggagaagaaggtgggcgttatgcagctggaagagtttgaa
aagccgcatcgcgatacaacgatccgcatgaagcacggcacgtacgacaagattgacgcc
gacggtctgtgtgcaccgggcacgcgtgtgtcgggcgacgatgtgatcatcggaaagacg
gcgccgctgccaccggattcggaggagctgggcatgcgttctaagttgcacaccaagaag
gacgccagcgtttcactcaagtcgaccgagaacggcatcatcgatcaggtgctggtgacg
accaactcgcacggcaacaagtttgtcaaggtgcgcgtacgcagcacacgtgtgccgcag
acaggtgacaagtttgcctctcgtcacggacagaagggtacgattggcatcacgtacaga
caggaggatatgccgttctcggcggaaggagtgacgccagatatcattatcaatccacac
gcgattccatcgcgaatgacgatcggacacttggtcgagtgcctgttgtccaaggtggcc
gcgttgtcgggtcaggagggagatgctacgccgttcaccgagttgacggtggaggcggta
tcatcgatcctgcgtggcttggggtatcaatcgcgtggcctggaagtcatgtaccatggc
catacgggacgcaagctgcaagcgcaggtgtacttgggacctacgtactaccagcgactg
aagcacatggtggatgacaagattcactcgcgagcgcgaggaccggtgcagattctgacg
cgacagcccgtggagggtcgatcgcgcggaggcggactgcgattcggagagatggaacgt
gattgcatgattgcgcatgggatcgcaggattcctcaaggagcgcatgtttgacgtgtct
gatccttaccgcatccatgtgtgcgatctttgtgggctcacagcgctagcgaacctcaag
aagggcacctacgagtgtcgatcctgccgaaaccgcacggcgatctcgcagatccacatc
ccttatgcagccaagttgcttatgcaagagctcatgagcgtcaatgtggcactgcgtctg
tattga
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