Mycosarcoma maydis: UMAG_11428
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Entry
UMAG_11428 CDS
T01021
Name
(RefSeq) putative nonsense-mediated mRNA decay protein, ATP-dependent RNA helicase
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
uma
Mycosarcoma maydis
Pathway
uma03013
Nucleocytoplasmic transport
uma03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
uma00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
UMAG_11428
03015 mRNA surveillance pathway
UMAG_11428
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
uma03019
]
UMAG_11428
Enzymes [BR:
uma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
UMAG_11428
5.6.2.5 RNA 5'-3' helicase
UMAG_11428
Messenger RNA biogenesis [BR:
uma03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
UMAG_11428
mRNA cycle factors
Common to processing body (P body) and stress granule
UMAG_11428
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
DEAD
NAT10_TcmA_helicase
nSTAND3
Ribosomal_S13_N
AAA_22
AAA_10
SRP54
AAA_16
UvrD_C_2
PhoH
ATPase
Motif
Other DBs
NCBI-GeneID:
23567313
NCBI-ProteinID:
XP_011386756
UniProt:
A0A0D1EBS5
LinkDB
All DBs
Position
1:<619624..>622908
Genome browser
AA seq
1094 aa
AA seq
DB search
MSELYQFDHFDGASNYGATNSEYSYTDSTSRSPELSNRQKHSKHASNSHRKHLDSDLDLD
SISDLHITERDLDPSRSHLHAHLAPHTKADVPSASNHSHTALHADLASLSEAGISDEADP
ALLENLPEHACAYCGIFNPACVVKCLTCNKWFCNSRGSTSGSHIVNHLVRAKHKEVCLHA
ESPLGETTPECYNCGAKNVFLLGFIPAKSETVVVLLCRQPCAAMSNSKDIIWDTTQWSPL
IEDRCFLTWLVKVPSEHEQLRARPVTLQQINRLEELWKDNASASLDDLDKPGVEEEPDSV
LLRYEDAYQYQNIFGPLVKMEADYDRKLKESQTQQDLVIRWDQGLNQKKIAWMMLPKLES
GEVRLAVGDELKLRYRGEMAPPWEGVGHVIKIPNHVSDEVALELNRADGVPDHCTHNFFA
DFVWKATSFDRMQNAMKTFAVDEQSLSAYIYHKLLGHEIDNATLRTTMPKRFSAPGLPEL
NHSQVNAVKSVLQKPLSLIQGPPGTGKTVTSATIVYQLSKMNPGPVLVCAPSNVAVDQLT
EKIHLTGLKVVRLTAKSREALDGPISFLTLHEQVANNDTNIELQKLIQLKNEQGELSSSD
ERKYKALTRACEKEILSTADVICCTCVGCGDPRLSKIKFRTVLVDEATQAAEPECMIPLV
MGCKQVVFVGDHLQLGPVIMNKKVARAGASQSLFERLIMLGNRPIRLQVQYRMHPCLSEF
PSNMFYEGTLQNGVTAPERLRKDVDFPWPVPSLPMLFFQNLGQEEISSSGTSFLNRTEAA
NVEKIVTRFFKAGVKPSQIGIVTPYEGQRSYIVNHMQLHGSLKKELYKDVEVASVDAFQG
REKDYIILSCVRSNEHQGIGFLSDPRRLNVALTRARFGLVILGNPKVLNKHPLWHYLLVH
YKEKGCLVEGVLSNLQPSMMQFPKPRRPLQKPGDLMARHRHDMVGVDGYGASRGGRFADA
GGKGGANQPGFFRTHDAMSYIPSDAQSVTSLGTQATYPSAHLSVSGLHGAYASSIVSQDV
DTESLAGSTAPPVSITYSQSDRLHRRLSLSSMSGASDATSIDNYKGDGSYVGAHDDDAGS
TFSAAISQSSFTTF
NT seq
3285 nt
NT seq
+upstream
nt +downstream
nt
atgtccgagctctaccagtttgaccactttgacggcgcttccaactacggtgctaccaac
tcggaatactcgtacacagattccacttcgcgctcccccgagctttccaaccgccagaaa
cactccaagcacgcctccaactcgcaccgcaagcatcttgattcggatctagacctcgac
tccatcagtgacctgcatatcacagagcgcgacctcgacccttctcgatctcatctccac
gctcaccttgccccgcacaccaaggccgatgtcccctcggcttcgaaccactcccatacg
gcccttcacgccgacttggcctctctttccgaagccggcatttcagacgaagcagatcct
gcgttgctggaaaacctccccgaacatgcttgcgcatactgtggtatcttcaacccggca
tgcgtagtcaagtgtctcacctgcaacaagtggttctgcaactcgcgcggctccacttca
ggctcccacattgtcaatcaccttgtacgcgcaaagcacaaggaggtatgcctccacgcc
gaatcgccgctcggtgagaccaccccggaatgctacaactgcggcgccaagaacgtcttt
cttctcggctttatcccggccaaaagcgagaccgttgtggtgctcctctgtcgtcagcct
tgtgctgccatgtcgaattccaaagacattatctgggacaccacccaatggtcgccgctc
atcgaggaccgttgcttcctcacctggctcgtcaaggtgccctccgaacatgagcagctg
cgtgcacgccccgtcaccttgcaacagatcaaccgtctcgaagagctctggaaggacaat
gccagcgctagccttgacgatctcgacaagccgggcgtcgaggaggaacctgacagcgtc
ctcctccgctacgaggatgcgtatcagtaccagaacatctttggacccttggtcaagatg
gaggccgattacgaccgcaagcttaaagagtcgcagacgcagcaagatctcgtcatccgt
tgggatcagggcctcaaccagaaaaagattgcttggatgatgcttcccaagctcgagagc
ggcgaagtgcgtctcgccgtcggtgacgaactcaagctccgctaccgaggcgagatggca
cctccttgggaaggtgtcggtcacgtcatcaagatccctaaccacgtctcggacgaggtg
gcgctcgagctcaacagagccgatggcgtccccgaccactgcacccacaattttttcgcc
gactttgtatggaaagctacgtcgtttgaccgcatgcagaacgccatgaaaacgtttgcc
gttgacgagcagagcctcagtgcctacatctaccacaagctgctcggacacgagatcgac
aatgctacgctgcgaaccaccatgccgaaacgcttcagtgcgcctggcctgcccgaactc
aaccacagccaagttaacgccgtcaagagcgtcctccagaaaccgctcagtctgatccaa
ggtccccccggtaccggaaagactgtcacctctgctacgatcgtctaccaactaagcaag
atgaatcccggtcccgttctggtctgtgcaccctccaacgttgccgtcgatcagctcacc
gaaaaaattcatctgaccggtctcaaggtggtgcgtctcaccgccaagagtcgagaggcg
ctcgacggccccatcagcttcctcacacttcatgagcaggtagccaacaacgacaccaac
atcgagctgcagaagcttattcagctcaagaacgagcagggcgaacttagcagcagtgac
gagcgcaaatacaaggcgctcacgcgtgcctgcgaaaaagagatcctcagcactgccgac
gtcatctgttgcacctgcgtcggatgcggcgaccctcgtctgtccaaaatcaaatttcgc
accgtgctggtcgacgaggctacgcaggcagctgaaccagagtgcatgattccactggtg
atgggttgcaagcaggtcgtgtttgtcggagaccatcttcagcttggccccgtcatcatg
aacaagaaggtggctcgcgctggcgccagccagagtctgtttgagcgtctcatcatgctc
ggtaaccgaccgattcgactgcaggtgcagtatcgcatgcatccttgtctatccgaattc
ccttccaacatgttctacgaaggcacgctgcagaacggtgtcacggcgcccgaacgtctg
cgcaaggacgttgactttccctggcccgtgccttcgcttcccatgctcttcttccaaaac
ctaggtcaagaggagatctcgagcagcggtacctcgttcttgaatcgcaccgaggcagcc
aacgtggaaaagatcgttacgcgcttcttcaaggctggtgtcaagccgtcgcagatcggc
atcgtgacgccgtacgagggccagcgaagctacattgtgaatcacatgcagctgcacggc
tcgctcaaaaaggagctctacaaggatgtcgaagtggccagcgtggatgcgttccaaggc
cgagaaaaggattacattatcctgagctgcgtgcgtagcaacgagcaccaaggcatcgga
ttcttgagcgatccacgacgactcaatgtggcgcttacgcgtgctcgattcggtctcgtg
atcttgggtaatcccaaggtgctcaacaagcatcctctgtggcactatctgctggtgcat
tacaaggaaaagggatgtctggtcgagggagtgctctcgaacctgcagccgagtatgatg
caattccccaaaccacgacgacctctgcaaaagccaggcgatcttatggcacggcatcgc
cacgatatggtcggagtcgatggctatggtgcgtcgcgcggcggccgcttcgccgatgca
ggtggtaagggaggggcgaatcagccgggcttcttccgcacgcacgatgccatgtcgtac
atcccgagtgacgcgcagagtgtaacgagtctgggcacgcaagcgacgtatccgtcggcg
cacctgtcggtgagcggcttgcatggcgcatatgctagcagcatcgtgagccaagacgtg
gataccgagagcttggcgggcagcaccgcaccaccggtcagtatcacgtacagccagagc
gaccgtctgcaccgtcggctgagcctgagcagcatgagcggcgcttcggacgcgacgagc
atcgacaactacaagggcgacggcagctacgtgggagcgcatgacgatgatgcaggctcg
acgttctcggctgccatctctcagtcttcatttacgacgttttga
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integrated database retrieval system
