Mycosarcoma maydis: UMAG_11667
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Entry
UMAG_11667 CDS
T01021
Name
(RefSeq) putative ATP-dependent RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
uma
Mycosarcoma maydis
Pathway
uma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
uma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UMAG_11667
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
uma03019
]
UMAG_11667
03041 Spliceosome [BR:
uma03041
]
UMAG_11667
03009 Ribosome biogenesis [BR:
uma03009
]
UMAG_11667
03016 Transfer RNA biogenesis [BR:
uma03016
]
UMAG_11667
Enzymes [BR:
uma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
UMAG_11667
Messenger RNA biogenesis [BR:
uma03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
UMAG_11667
Spliceosome [BR:
uma03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
UMAG_11667
Complex C
U4/U6.U5 tri-SnRNP related factors
UMAG_11667
Ribosome biogenesis [BR:
uma03009
]
Eukaryotic type
Pre-60S particles
Helicases
UMAG_11667
Transfer RNA biogenesis [BR:
uma03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
UMAG_11667
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
23567523
NCBI-ProteinID:
XP_011388063
UniProt:
A0A0D1CV54
LinkDB
All DBs
Position
3:134919..138293
Genome browser
AA seq
1124 aa
AA seq
DB search
MDPDGLFDFLAPAEAAPSPAASSGSSPSKKQRKRSKAAAASSSSSQDVTSSPSASQNNDA
ATSNPQNADAASDGGEAEAGPSKRQKRNTTSDKPAPVPTVVTDEFTDEATQAIPIEDGSA
APCNSAGASDADGAAASATGGASASTANTNAAEKNMHITHSVRHQVALPPDYPYVPLSQH
VPNDPPAKEYKFTLDPFQRNSVSCIERNESVLVSAHTSAGKTVVAEYAIAQCLKNGQRVV
YTSPIKALSNQKFRELTAEFGDVGLMTGDVTINPSASCLVMTTEILRSMLYRGSEIMREV
AWVVFDEIHYMRDKERGVVWEETIILLPRKVRYVFLSATIPNAMQFAEWIAHTHAQPCHV
VYTDFRPTPLQHYLFPQGGEGIHLVVDERGTFREDNFQKAMGALADSKGEDVADPNAGAG
KRRGQVKKGGNAGKKGPSDIYKIVKMIMVKNYNPVIVFAFSKRECEALALQMSKLEFNTE
DEKEMVSTVFSNAINALSEEDRGLPQIEHILPLLRRGIGIHHGGLLPILKEVIEILFQEG
LIKVLFATETFSIGLNMPAKTVVFTAVNKWDGKEFRNLTSGEFIQMSGRAGRRGLDDRGI
VIMMFDEKLEPSAAKTMVKGEADRLNSAFHLGYNMILNLMRVEGISPEYMLERCFFQFQN
AASVPALEAEQKAAEEQRDLIEVEREEEVAEYYDVKHQLETLRKDVQTVITHPSYVLPFL
QPGRLVNVCHDDLDFGWGAVVSYEKRLPNTPGKRGPAIDPNAPPQNHYVVDVLLHCASGS
GSSDKNAKNDGTSNFRPCPAGSKGEMVVVPVLLSTIQSISGIRVFLAKDLRPSEPRETVR
KNLVEVKRRFPKGVPLLDPIKDMKIKDESFAHLVEKIKILDDKLGSSRLRNDPDLPRLYA
AYSKKQAAQQVVSAIAKKIAAAHSVLQLDELKCRKRVLRRLGFTTSDDVVEKKGRVACEI
STGDELLLTEMMFNGVFNDLTPPQCAALLSCFVFGEKSTTQTRLNETLAAPLRIMQETAR
RIAKVSIESKLALVEEEYVSSFKVELMDLVMQWCNGAKFAEICKLTDVFEGSIIRCMRRL
QELIRQLVQAAKAIGNEALAEKFDKSLTMLEREGSIIFSPSLYL
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atggatccagacggcctgttcgactttctcgctcctgcagaggctgcaccgagccctgct
gcctcatcaggctcttcgccatccaagaagcagaggaaacgatccaaagctgctgctgcc
tcttcgtcctcttcgcaagatgtcaccagctcgccttccgcttcgcagaataacgacgct
gccacgtcaaatccacagaacgctgatgctgcttccgacggtggcgaggcagaagcaggc
ccctcgaaacgccagaagcgcaatactacctcggataagccagctcccgtccctaccgtg
gtgacagacgagttcactgacgaagccacccaagccatccccatcgaggatggctctgct
gctccctgcaactctgcaggcgcgagtgatgctgacggggctgctgcgtcggccacaggc
ggcgcttctgcctcaaccgcgaacaccaatgctgccgaaaaaaatatgcatatcacgcat
tccgttcgtcatcaggtcgctctccctcccgattacccatacgtaccgctatcacagcat
gtccccaacgacccccctgccaaagagtacaaattcaccctcgaccctttccagcgcaac
tcagtttcttgtattgagcgcaacgagtcggtcctcgtctcggcgcatacctcggctggt
aaaaccgtcgtggccgagtacgccatcgctcaatgcctcaagaacggtcaacgtgtcgtc
tacacttctcccatcaaggcgctctccaaccaaaagttccgtgagctcaccgccgagttt
ggcgacgtcggcctcatgaccggtgatgtcaccatcaacccgtcggcatcctgcctcgtc
atgaccaccgaaattttgcgttccatgctctaccgtggctcagagatcatgcgtgaggtt
gcatgggtcgtctttgacgagattcactacatgcgcgacaaggagcgtggtgttgtctgg
gaagagaccatcatcctgctaccacgcaaggtgcgctacgtctttctctcggccaccatt
cccaatgccatgcaattcgcagagtggatcgcccatacccatgcacagccgtgtcacgtt
gtctacaccgatttccgtcccactcctctccagcactacctctttcctcaaggaggcgaa
ggcatccaccttgtcgtcgacgagcgcggcacattccgcgaggacaactttcagaaagcc
atgggtgcgctcgccgactccaagggcgaagacgtggccgaccccaacgcgggagctgga
aagcgtcgcggtcaggtcaaaaagggtggcaatgcaggcaaaaagggtccctcggacatt
tacaagattgtcaaaatgatcatggtcaaaaactataaccccgtcattgtcttcgctttc
tccaagcgcgaatgcgaggcgcttgcattgcagatgagcaagctcgaattcaatacagaa
gacgagaaagagatggtctcgaccgtcttttccaatgctatcaatgcactttcagaggaa
gatcgaggcctcccccagatcgagcacattcttccgctccttcgtcgcggcatcggcatt
caccacggtggcttgttgcccattctcaaagaggtcatcgagatcctcttccaagaaggt
ctcatcaaggtgctctttgccaccgaaaccttctcgatcggtctcaacatgccggccaag
acggtcgttttcaccgccgtcaacaagtgggacggcaaagagttccgcaacctcacctcg
ggcgaatttatccagatgtcaggtcgagccgggcgacgtggactcgatgaccgtggtatc
gtcatcatgatgttcgacgaaaagttggaaccaagcgcagccaagaccatggtcaaaggc
gaggcggatcgtctcaattcggccttccacctgggctacaacatgattctgaacctcatg
cgcgtcgaaggtatctcgccagagtatatgctggagcggtgcttcttccagttccagaac
gccgcttcggtgcctgcgctcgaggccgagcagaaggcggctgaagaacagcgcgacctg
atcgaggtggagcgcgaagaagaggtggccgaatactacgacgtcaagcaccagctcgag
acgctgcgcaaggatgtgcagaccgtcatcacccatccgtcgtacgtgctgccgtttttg
cagcccggtcgactggtgaatgtgtgccatgacgatctcgactttggatggggtgcggtc
gtgtcgtatgagaagcgactgccgaatacaccgggcaaacgcgggcctgctatcgatccc
aacgcgccgccgcagaatcattacgtggtcgatgtgcttctgcactgcgcctcgggttcc
ggctcatcggacaagaacgccaagaacgatggcacgagcaactttcgcccttgccctgca
ggcagcaaaggcgagatggtcgtcgttcctgttctgttgtcgacgatccagtcgatttcg
ggcattcgcgtcttcctcgccaaagatctgcgtccgagtgaacctcgcgaaacggtgcga
aagaacctcgtcgaagtgaaacgccgcttccccaagggcgtaccacttctggacccgatc
aaagacatgaagattaaagacgagtcgtttgcgcacctcgtggaaaaaatcaagattctc
gacgacaagcttggctcgtcacggctgcgcaacgatccagatctgccacgactctatgcg
gcttattcaaaaaagcaggcagcacaacaagtcgttagcgcgatcgccaagaaaatcgcc
gctgcgcattccgtcttgcagctggacgagttgaaatgtcgcaagcgcgtgcttcgacga
cttggcttcacaacgtcagacgatgtcgtggagaagaagggcagggtcgcatgcgagatc
tcgaccggcgacgaacttttgttgacagagatgatgtttaacggtgtcttcaatgacctt
acgccgccgcagtgcgcggcgctgttatcgtgttttgtgtttggcgaaaagtcgaccacg
caaacgcggctcaacgagacgctcgccgcaccgctgcgcatcatgcaggaaaccgcacgt
cgaatcgccaaggtctcgatcgaatcgaaactggcgctcgtcgaagaagaatacgtgtca
agcttcaaagtggaactcatggacctggtcatgcagtggtgcaacggtgcaaagtttgcc
gagatctgcaaactcaccgacgtcttcgagggaagcatcatcagatgtatgcgcagactc
caagagttgatcagacagctcgtccaggctgccaaggctattggcaatgaggcgctcgcc
gaaaagttcgacaaatctctcaccatgttggagagggagggaagcatcatctttagtcca
tcgttgtatttgtga
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