Mycosarcoma maydis: UMAG_11769
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Entry
UMAG_11769 CDS
T01021
Name
(RefSeq) putative ATP-dependent RNA helicase SUB2
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
uma
Mycosarcoma maydis
Pathway
uma03013
Nucleocytoplasmic transport
uma03015
mRNA surveillance pathway
uma03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
uma00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
UMAG_11769
09122 Translation
03013 Nucleocytoplasmic transport
UMAG_11769
03015 mRNA surveillance pathway
UMAG_11769
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
uma03019
]
UMAG_11769
03041 Spliceosome [BR:
uma03041
]
UMAG_11769
Enzymes [BR:
uma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
UMAG_11769
Messenger RNA biogenesis [BR:
uma03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
UMAG_11769
Spliceosome [BR:
uma03041
]
Complex C
Other components
EJC/TREX
UMAG_11769
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
UMAG_11769
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
AAA_19
Motif
Other DBs
NCBI-GeneID:
23567616
NCBI-ProteinID:
XP_011391382
UniProt:
A0A0D1BZF0
LinkDB
All DBs
Position
15:<176028..>178438
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AA seq
435 aa
AA seq
DB search
MSAIDNEDLIDYEEEVAVAPTSTTNGAATAANGATTADDKDKKGSYVGIHSTGFRDFLLK
PELLRAISDLGFEHPSEVQQECIPQSILGMDVVCQAKSGMGKTAVFVLATLQQIEPVDGE
VSVLVLCHTRELAYQIRNEYARFTKYMPDVRTGVIYGGTPVAENQAMLKDKAKCPHILVG
TPGRMNALVRDKSLKVSGVKHFVIDECDKILEQVDMRRDVQDIFRATPHHKQVMMFSATL
AKEVRPTCKKFMQNPLEIYVDDETKLTLHGLQQHYVRLEESAKNRKLNDLLDSLEFNQVI
IFVKSISRANELDKLLRECNFPSICIHGGLAQEERIKRYQQFKNFEKRILVATDIFGRGI
DVERVNVSISYDTPTDADSYLHRVGRAGRFGTKGLAIMFVSSDEDAEVLKQIQSRFEVAV
PELPDTIEASSYMNA
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgtccgccatcgacaacgaagatcttatcgactacgaggaggaggtcgccgtcgcaccc
acctcgaccaccaacggcgccgccactgccgccaacggcgctaccaccgctgacgacaaa
gacaaaaagggctcctacgtcggtattcactctacaggtttccgcgatttcctcctcaag
cccgagcttctccgagccatctcggatcttggttttgaacacccttccgaagtccagcaa
gaatgtatcccacagtccatcctcggcatggacgttgtctgccaggccaagtccggtatg
ggtaagacggccgttttcgtgcttgccaccctccagcagatcgagcccgtcgacggcgaa
gtctcggtacttgtgctgtgccacacccgagagcttgcctaccagatccgcaacgagtac
gcccgtttcaccaaatacatgcccgacgttcgcaccggcgtcatctacggtggcactccc
gtcgccgaaaaccaggccatgctcaaggacaaggccaagtgccctcacatcctcgtcgga
acacccggtcgtatgaacgcgctcgtgcgcgacaagagtctcaaggtgtccggcgtcaag
cactttgtcattgacgagtgcgacaagattcttgagcaggtcgacatgcgcagagatgtg
caggatatcttccgtgccacgcctcaccacaagcaggtcatgatgttctcggccacgctc
gccaaggaagttcgacctacctgcaaaaagttcatgcagaacccactggaaatctacgtg
gacgacgaaaccaaacttacgctgcacggtctgcagcagcactacgttcgactggaagaa
tcggccaagaaccgcaagctcaacgacctgctcgactcgctcgaattcaaccaagtaatc
atctttgtcaagtcgatctctcgcgccaacgagctggacaagctgctgcgcgagtgcaac
tttccgtcgatctgcatccacggcggactggcacaggaagagcgcatcaagcgctaccag
cagttcaagaactttgagaagcgtattctggtcgctaccgatattttcggtcgtggtatc
gatgtggagcgtgtcaacgtatccatcagctacgacacgcctacagatgccgatagctac
ttgcaccgcgtcggtagggctggtcgtttcggcacaaagggtttggctatcatgtttgtt
tccagcgatgaagacgccgaggtgctcaagcagattcagagccgattcgaggtggctgtt
cccgaactccccgacaccatcgaagctagctcttacatgaacgcctag
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