Umezawaea sp. Da 62-37: RM788_09920
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Entry
RM788_09920 CDS
T09853
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ume
Umezawaea sp. Da 62-37
Pathway
ume03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ume00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RM788_09920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ume03019
]
RM788_09920
03009 Ribosome biogenesis [BR:
ume03009
]
RM788_09920
Enzymes [BR:
ume01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RM788_09920
Messenger RNA biogenesis [BR:
ume03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RM788_09920
Ribosome biogenesis [BR:
ume03009
]
Prokaryotic type
rRNA helicases
RM788_09920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
WSD
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WNV88592
UniProt:
A0AA96QUN6
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All DBs
Position
2299680..2301410
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AA seq
576 aa
AA seq
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MTPEVTDVPAVVDATEAIDTTEDRTTFADLALRPELLKALTTLGYEEPTPIQREAIPPLL
EGKDLLGQAATGTGKTAAFALPVLQKLAESDRRTTAPLALVLVPTRELAVQVCEAVHKYG
RDLGARVLPIYGGQPIGRQLQALERGVDVVVATPGRAIDHIGRGTLKLDSLEIVVLDEAD
EMLDMGFAEDIESILQETPESRQTVLFSATMPPRIDKLARQHLKDPVRITIGREQTAPGE
APRVRQSAYIVPRAHKPAALGRVLDVEAPTAAIVFCRTRDEVDQLTETLNGRGYRAESLH
GGISQEQRDRVMGRLRNGTADLLVATDVAARGLDIEQLTHVVNYNVPSAPESYVHRIGRV
GRAGREGVAITLAEPREHGMLKTIERVTKQRIPVEKVPTVADLKARRLELTRAALHESLL
EDQLEGFRVVVETLTDEFDLMEIALAAVKLAHEASGAAAEEEEEIPDVSARLDRPGRGSA
EPGNRRERRPRTPTAGMTRLFFGAGRSAGIRPQDLVGAIAGEAKLKGRDIGAIEIADRFS
LVEVPESAAQSVIVALRGATVKGRKVSVRLERDQAG
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgacccccgaagtgaccgacgtgcccgccgttgtcgacgcgaccgaagcgatcgacacg
accgaggaccggacgacgttcgccgacctggcgctgcggcccgaactcctcaaggcgctg
acgaccctcggctacgaagagccgacgcccatccagcgcgaggcgatcccgccactgctg
gagggcaaggacctgctcggccaggccgcgaccggcaccggcaagaccgccgcgttcgcg
ctgccggtgctgcagaagctggccgagtcggatcggcgcacgaccgccccgctggccctg
gtgctggtgccgacccgcgaactcgcggtgcaggtgtgcgaggccgtgcacaagtacggc
cgcgacctgggcgcccgcgtgctccccatctacggcggccagcccatcggccgccagctc
caggccctggagcgcggtgtcgacgtcgtcgtcgccacgccgggccgggccatcgaccac
atcggtcgcggcacgctgaagctcgacagcctggagatcgtcgtcctcgacgaggccgac
gagatgctcgacatgggcttcgccgaggacatcgagagcatcctccaggagacccccgag
tcccggcagacggtgctgttctccgccacgatgccgccgcgcatcgacaagctggcccgc
cagcacctgaaggacccggtgcggatcacgatcgggcgcgagcagaccgcgcccggcgag
gccccccgcgtccgccagagcgcgtacatcgtgccccgcgcgcacaagcccgccgcgctg
ggccgcgtgctcgacgtggaggcgcccaccgccgcgatcgtcttctgccgcacccgcgac
gaggtcgaccagctgaccgagaccctcaacggccgcggctaccgggcggagtcgctgcac
ggcggcatcagccaggagcagcgcgaccgggtcatgggcaggctgcgcaacggcacggcc
gacctgctggtcgcgacggacgtcgccgcccgcggcctggacatcgagcagctcacccac
gtggtgaactacaacgtcccgtccgcccccgagtcctacgtgcaccgcatcggccgcgtc
ggccgcgcgggccgcgagggcgtggccatcacgctggccgagccccgcgagcacgggatg
ctcaagaccatcgagcgggtcaccaagcagaggatcccggtcgagaaggtccccacggtc
gcggacctcaaggcccgcaggctggagctgacccgcgcggcgctgcacgagagcctgctg
gaggaccagctcgagggcttccgggtcgtcgtggagacgctgaccgacgagttcgacctc
atggagatcgcgctcgcggccgtgaagctggcccacgaggcctccggtgccgccgcggaa
gaggaggaggagatcccggacgtgtccgcgcgtctcgaccgccccggccgcgggtccgcc
gagcccggcaaccggcgtgagcgcaggccgcgcacgcccaccgcgggcatgacccggctg
ttcttcggcgcgggccgcagcgcgggcatccggccgcaggacctggtcggcgccatcgcg
ggcgaggccaagctcaagggccgcgacatcggcgcgatcgagatcgcggaccggttctcg
ctggtggaggtgcccgagtcggcggcgcagtcggtgatcgtcgccctgcgcggcgcgacg
gtcaagggccgcaaggtgtccgtgcgcctggaacgcgaccaggcaggctga
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