Umezawaea sp. Da 62-37: RM788_18285
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Entry
RM788_18285 CDS
T09853
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ume
Umezawaea sp. Da 62-37
Pathway
ume03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ume00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RM788_18285 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ume03021
]
RM788_18285 (rho)
03019 Messenger RNA biogenesis [BR:
ume03019
]
RM788_18285 (rho)
Transcription machinery [BR:
ume03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
RM788_18285 (rho)
Messenger RNA biogenesis [BR:
ume03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
RM788_18285 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
Spore_III_AA
AAA_25
NACHT
Motif
Other DBs
NCBI-ProteinID:
WNV90168
LinkDB
All DBs
Position
complement(4113240..4115348)
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AA seq
702 aa
AA seq
DB search
MSNTDLLSSNAAPEAAASSGAEENALSTPSNGSAPRKRAGLSGMVLAELRELAGQLGING
TAGLRKGDLIAAIKEKQGGTSGRGSAATPPAKTEKPAAVKVAEAPAVEAPRVVEKSAPVE
KPVQQQLEVTEQSATGGEEEGGRRNNRRRRSSGRAAGSPEALVAAPAEAPAVERSPERPA
QERPAQERPAQERPQQDRTQQERPQQDRNQGERPERGEQQRPERGERQDRGDRGDRPERG
NRQDRGDRPERGERPERGQGRNRQNERSNERSNDRQNDRQNNVVEDDDEEGGRRGRRFRD
RRRRGGRIEGGAPGAPDTEVRDDDVLLPVAGILDVLENYAFVRTSGYLAGPNDVYVSLSL
VRKYGLRRGDALIGAVRQPRDGEQQRQKFNPLVRVDKINGLDPDQLKNRDDFTKLTPLYP
NERLRLETEPHILTTRVIDLVMPIGKGQRALIVSPPKAGKTSVLQSIANAITTNNPECHL
MVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTISELAIERAKRLVEMGHDVVVLL
DSITRLGRAYNLAAPASGRILSGGVDSTALYPPKRFLGAARNIENGGSLTVIATALVETG
SAGDSVIFEEFKGTGNAELKLDRKIADKRIFPAVDVDPSGTRKEDLLLSPDELAVMHKLR
RVLHALDSQQAIELLLDRLRKSRTNIEFLMQVAKTTPGNEGV
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaacaccgatttgttgagcagcaacgctgctcccgaagccgctgccagttctgga
gccgaggagaacgccctgtccaccccttccaacggcagcgccccgcgcaagcgggcaggt
ctgtccggcatggtgctcgcggagcttcgtgagctcgcgggccaactcggcatcaacgga
accgcgggtctgcgcaagggcgacctcatcgcggcgatcaaggaaaagcagggtggtacc
tccggtcggggcagtgccgcgaccccgcccgccaagaccgagaagcccgcggccgtgaag
gtcgccgaggcacccgcggtcgaggctcctcgtgtcgtcgagaagtccgccccggtggag
aagccggtccagcagcagctcgaggtcaccgagcagtccgcgacgggcggtgaggaggag
ggcggccgtcgcaacaaccggcgccgcaggtcctccggccgtgccgcgggcagcccggag
gcgcttgtggcggccccggccgaggcacccgccgtcgagcgctccccggagcgcccggcg
caggaacgccccgcccaggagcgtccggcgcaagagcgtcctcagcaggaccgcacccag
caggagcgcccgcagcaggaccgcaaccagggcgagcgccccgagcgcggtgagcagcag
cgtcccgagcgcggcgagcgccaggaccgcggcgaccgcggcgaccgccccgagcggggc
aaccgccaggaccgcggcgaccggccggagcgcggcgagcgccccgagcgcggccagggc
cgcaaccgccagaacgagcggtccaacgagcggtccaacgaccgccagaacgaccgccag
aacaacgtggtggaggacgacgacgaggagggcggtcgtcgcggccgtcgcttccgcgac
cgccgccgccgtggcggccggatcgagggcggcgcccccggcgctcccgacaccgaggtg
cgcgacgacgacgtcctgctgcccgtcgcgggcatcctggacgtgctggagaactacgcc
ttcgtgcgcacctccggctacctcgcgggcccgaacgacgtctacgtctcgctgtcgctg
gtccgcaagtacggcctgcgccgcggcgacgcgctgatcggcgccgtccgccagccgcgc
gacggtgagcagcagcggcagaagttcaacccgctggtgcgcgtcgacaagatcaacggc
ttggacccggaccagctcaagaaccgggacgacttcaccaagctcacgccgctgtacccg
aacgagcgactgcgcctcgagaccgagccgcacatcctcaccacgcgcgtcatcgacctg
gtgatgccgatcggcaagggccagcgcgcgctgatcgtgtcgccgccgaaggcgggcaag
acctcggtgctccagtcgatcgcgaacgcgatcacgacgaacaaccccgagtgccacctg
atggtcgtcctcgtggacgagcgtccggaagaggtcaccgacatgcagcgctcggtgaag
ggcgaggtcatcgcctcgaccttcgaccggccgccgtcggaccacaccaccatctccgag
ctggccatcgagcgcgcgaagcgcctcgtggagatgggccacgacgtggtcgtgctgctc
gactcgatcacccgcctgggccgtgcgtacaacctggccgccccggcgtccgggcgcatc
ctgtccggtggtgtcgactcgacggcgctctacccgccgaagcgcttcctcggcgcggcg
cgcaacatcgagaacggtggctcgctcaccgtcatcgcgaccgcgctcgtcgagaccggc
tccgccggtgacagcgtgatcttcgaggagttcaagggcaccggcaacgccgagctcaag
ctcgaccgcaagatcgccgacaagcggatcttccccgcggtggacgtcgacccgtccggt
acccgcaaggaagacctgctgctgtcgccggacgagctcgcggtcatgcacaagctccgc
cgcgtgctgcacgcgctcgacagccagcaggccatcgagctgctgctcgaccggctgcgc
aagagccggacgaacatcgagttcctcatgcaggtcgccaagaccacccccggcaacgag
ggcgtctga
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