Umezawaea sp. Da 62-37: RM788_25160
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Entry
RM788_25160 CDS
T09853
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
ume
Umezawaea sp. Da 62-37
Brite
KEGG Orthology (KO) [BR:
ume00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ume03032
]
RM788_25160 (gyrB)
03400 DNA repair and recombination proteins [BR:
ume03400
]
RM788_25160 (gyrB)
Enzymes [BR:
ume01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
RM788_25160 (gyrB)
DNA replication proteins [BR:
ume03032
]
Prokaryotic type
DNA Topoisomerases
RM788_25160 (gyrB)
DNA repair and recombination proteins [BR:
ume03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RM788_25160 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
Motif
Other DBs
NCBI-ProteinID:
WNV91432
LinkDB
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Position
5506674..5508647
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AA seq
657 aa
AA seq
DB search
MADKNEYGASSISVLEGLEAVRKRPGMYIGSTGERGLHHLIQEVVDNSVDEAMAGYATFV
DVTLLANGGVRVIDDGRGIPIDMHPVEKVPTLEVVMTKLHAGGKFDSDSYAVSGGLHGVG
ISVVNALSTVVDVEIKRQGFTWNQRYENTKPAHPLTKGAAVAEEDTGTVITFWADPTIFE
TTTYNLETISRRLQEMAFLNKGLTITLRDERVVEADAEADAEGHVARVKERTFHYPNGLE
DFVKHINHTREEVHKKVIAFEAKGDGIDVEVAMQWNTGYTASVYTFANTINTHEGGTHEE
GFRAALTRVVNEYARDKKLLKEKDTNLTGDDIREGLAAIISVKLKEPQFEGQTKTKLGNS
EAKSFVQKSTNEHLADWFERHPNEARTIVTKAVSSAQARMAARKARELVRRKGALDIGGL
PGKLKDCRSTNPEECELYIVEGDSAGGSAKEGRDSMFQAILPIRGKIINVEKARIDRVLK
NNEVQSLITALGTGIHDEFDLSKLRYHKVVLMADADVDGQHIRTLLLTLLFRFMRPLIEH
GHVYFAQPPLYKIKWQRIEPEFAYSDRERDVVIEEGLKTGKKLGKDDNIQRYKGLGEMNA
SELWETTMDPAHRLLMQVTLDDAATADELFSVLMGEDVEARRSFITRNAKDVRFLDV
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
gtggcagacaagaatgagtacggcgcgtcctcaatcagcgtcctcgagggcctggaggcc
gtccgcaagcgccccggtatgtacatcgggtccaccggcgagcggggtctgcaccacctc
atccaggaggtggtcgacaactcggtcgacgaggccatggcggggtacgccacgttcgtc
gacgtgacgctgctggccaacggcggcgtccgggtgatcgacgacggtcgcggcatcccg
atcgacatgcacccggtggagaaggtcccgaccctcgaggtcgtcatgaccaagctccac
gcgggcggcaagttcgacagcgactcgtacgcggtctccggtggtctgcacggcgtcggc
atctcggtcgtgaacgcgctgtcgaccgtcgtcgacgtcgagatcaagcgccaaggtttc
acgtggaaccagcgctacgagaacaccaagcccgcgcacccgctgaccaagggcgcggcc
gtcgcggaagaggacaccggaacggtcatcacgttctgggccgacccgacgatcttcgag
accaccacctacaacctggagacgatctcccgtcgcctccaggagatggcgttcctgaac
aaggggctcaccatcaccttgcgcgacgagcgggtcgtggaggcggacgccgaagccgac
gccgagggtcacgtggcgcgcgtcaaggagcgcactttccactacccgaacgggctcgag
gacttcgtcaagcacatcaaccacacgcgcgaagaggtccacaagaaggtcatcgcgttc
gaggccaagggcgacggcatcgacgtcgaggtcgcgatgcagtggaacaccggctacacc
gcgtcggtgtacacgttcgccaacacgatcaacacccacgagggtggcacgcacgaggag
ggcttccgcgccgccttgacccgagtggtcaacgagtacgcgcgcgacaagaagctgctc
aaggagaaggacaccaacctcaccggcgacgacatccgcgagggtctcgccgcgatcatc
tcggtgaagttgaaggagccccagttcgaggggcagacgaagaccaaactgggcaacagc
gaggccaagtcgttcgtgcagaagtcgaccaacgagcacctggccgactggttcgagcgc
caccccaacgaggcgcgcacgatcgtcacgaaggcggtctcgtcggcgcaggcccggatg
gcggcccgcaaggcgcgcgaactggtccgccgcaagggcgcgctcgacatcggcggcctg
cccggcaagctgaaggactgccgctccaccaacccggaggagtgcgagctctacatcgtg
gagggcgactccgcgggcggctcggccaaggagggccgggactccatgttccaggcgatc
ctgccgatccgcggcaagatcatcaacgtggagaaggcccgcatcgaccgggtcctcaag
aacaacgaggtgcagagcctcatcaccgcgctcggcaccggcatccacgacgagttcgac
ctgtcgaagctgcgctaccacaaggtcgtcctgatggcggacgccgacgtggacggccag
cacatccgcacgctgctgctcaccctgctgttccgcttcatgcggccgctgatcgagcac
ggccacgtctacttcgcgcagccgccgctgtacaagatcaagtggcagcgcatcgagccg
gagttcgcctactccgaccgcgagcgcgacgtggtgatcgaggaaggcctgaagacgggc
aagaagctcggcaaggacgacaacatccagcggtacaagggtcttggcgagatgaacgcc
tccgagctgtgggaaaccacgatggacccggctcaccgcctgctcatgcaggtgaccctg
gacgacgccgcgacggcggacgagctgttcagcgtgctgatgggcgaggacgtggaagcg
cgccgctccttcatcacccgcaacgccaaggacgtccggttcctggacgtgtga
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