Umezawaea sp. Da 62-37: RM788_38615
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Entry
RM788_38615 CDS
T09853
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ume
Umezawaea sp. Da 62-37
Pathway
ume03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ume00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RM788_38615 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ume03019
]
RM788_38615 (recQ)
03400 DNA repair and recombination proteins [BR:
ume03400
]
RM788_38615 (recQ)
Enzymes [BR:
ume01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RM788_38615 (recQ)
Messenger RNA biogenesis [BR:
ume03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RM788_38615 (recQ)
DNA repair and recombination proteins [BR:
ume03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RM788_38615 (recQ)
BRITE hierarchy
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
Motif
Other DBs
NCBI-ProteinID:
WNV84034
LinkDB
All DBs
Position
8351907..8353745
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AA seq
612 aa
AA seq
DB search
MVTPDIGTDPSEARQVLHRVFGYDAFRGSQQDVIEHVVAGGDALVLMPTGGGKSLCYQIP
ALVRAGVGVVISPLIALMQDQVDALRNVGVRAGFLNSTQNPDERSMVESEFLAGEIDLLY
LAPERLRLESTMRLLDRGKVSLFAIDEAHCVAQWGHDFRPDYLALSALHERWPDVPRIAL
TATATEATHAEIATRLNLKEARHFVASFDRPNIQYRIEPKNEPKRQLLDLLKTEHAGDAG
IVYCLSRASVEKTADFLVQNGIPALPYHAGLDSRVRSTNQSRFLREDGLVMVATIAFGMG
IDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGLPSTAWLAYGLQDVVQQRKMIDTSEGDQ
AHRRMLGKHLDAMLSLCEAVDCRRTRLLAYFGQEGTPCGNCDTCLSPPESWDGTIPAQKL
LSTVYRLHNERRQKFGAGQVIDILLGKKTAKVIQFDHDSLTVFGIGADLRETEWRGVVRQ
LLAQGLLAVEGDYGTLVLTESSAEVLGRKREVLLRREPEKARASRPAKTSKAAAAVVDLP
AEAVPVFERLRAWRGATAKEQGVPAYVVFHDATLRQVATLGPSTLEELGTVNGVGENKLA
KYGQGILDALAE
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atggtgacccccgacatcggaaccgatccgagcgaagcccggcaggtgctgcaccgggtg
ttcggctacgacgcgttccgcggcagccagcaggacgtcatcgagcacgtggtggcgggc
ggcgacgcgctggtcctgatgccgacaggcggcggcaagtccctctgctaccagatcccc
gcgctggtcagggcgggtgtcggtgtggtcatctcgcccctgatcgcgctcatgcaggac
caggtcgacgccctgcgcaacgtgggcgtgcgcgcgggcttcctgaactccacgcagaac
ccggacgagcgcagcatggtcgagtccgagttcctcgcgggcgagatcgacctgctgtac
ctggcgccggaacggctgcgcctggaatccaccatgcgcctgctcgaccgcggcaaggtg
tcgctgttcgcgatcgacgaggcgcactgcgtcgcccagtggggccacgacttccgcccg
gactacctggcgctctcggccctgcacgagcgctggccggacgtgccgcgcatcgcgttg
acggcgacggcgaccgaggccacgcacgcggagatcgcgaccaggctgaacctcaaggag
gcccggcacttcgtcgccagcttcgaccgcccgaacatccagtaccgcatcgagcccaag
aacgagccgaagcggcagctgctcgacctgctcaagacggagcacgcgggcgacgcgggc
atcgtctactgcctgtcccgcgcgtcggtggagaagaccgcggacttcctggtgcagaac
gggatcccggcgctgccctaccacgccgggctggactcgcgggtgcgctcgaccaaccag
tcccgcttcctgcgcgaggacgggctcgtgatggtcgcgaccatcgcgttcggcatgggc
atcgacaagccggacgtccggttcgtcgcccacctcgacctgccgaagtccgtcgagggc
tactaccaggagaccggccgcgcgggccgcgacggcctgccgtccacggcctggctggcc
tacgggctccaggacgtggtgcagcagcggaagatgatcgacacctccgagggcgaccag
gcgcaccggcggatgctcggcaagcacctcgacgcgatgctctcgctctgcgaggcggtc
gactgccgccgcacccgcctgctcgcctacttcggccaggagggcacgccctgcggcaac
tgcgacacgtgcctgtcaccgcccgagtcgtgggacggcaccatccccgcgcagaagctg
ctgtccacggtgtaccggctccacaacgagcgcaggcagaagttcggcgcgggccaggtg
atcgacatcctgctggggaagaagaccgccaaggtcatccagttcgaccacgactcgctg
accgtcttcggcatcggcgcggacctccgcgagaccgagtggcgcggggtggtgcggcag
ctgctggcgcaggggctgctggccgtcgagggcgactacgggaccctggtgctgaccgag
tcgagcgccgaggtgctgggccgcaagcgcgaagtgctgctgcgccgcgagccggagaag
gcgcgcgcgtcccgccccgcgaagacttcgaaggccgccgccgcggtggtggacctgccc
gccgaggccgtgccggtgttcgagcggctgcgggcctggaggggcgcgacggcgaaggag
cagggcgtgcccgcctacgtggtgttccacgacgcgacgctgcgtcaggtggccacgctg
ggtccgtcgacgttggaggagttgggcacggtgaacggggtgggggagaacaagctcgcc
aagtacgggcaggggatcctggacgcgttggcggagtga
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