Ursus maritimus (polar bear): 103659103
Help
Entry
103659103 CDS
T03271
Symbol
PDCD11
Name
(RefSeq) LOW QUALITY PROTEIN: protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
umr
Ursus maritimus (polar bear)
Brite
KEGG Orthology (KO) [BR:
umr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
umr03009
]
103659103 (PDCD11)
Ribosome biogenesis [BR:
umr03009
]
Eukaryotic type
90S particles
Other 90S particles
103659103 (PDCD11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
S1_RRP5
S1
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
Spt6_S1
OB_RRP5
OB_RRP5_4th
Suf
TPR_14
HAT_Syf1_CNRKL1_C
TPR_19
ARM_TT21
UTP6_C
TPR_CcmH_CycH
TPR_15
ARM_TT21_5th
DUF7017
DUF2110
DUF2642
Motif
Other DBs
NCBI-GeneID:
103659103
NCBI-ProteinID:
XP_040480377
UniProt:
A0A8M1FEP3
LinkDB
All DBs
Position
Unknown
AA seq
1872 aa
AA seq
DB search
MEESFPRGGTRKTHKSKKALQQSVEQDNLFDISTEEESTKRKKSQKGPAKTKKLKIEKRD
SSKSTREKFEILSIESLCEGMRILGCVKEVNELELVISLPNGLRGFVQVTEICDAYTKKL
NEQVAQEEPLKDLVGLPELFSPGMLVRCVVSSVGITERGKKSVKLSLNPKNVNEVLSAEA
LKPGMLLTGTVSSLEDHGYLVDIGVSGARAFLPLQKAQEYIRQKNKGAKLKVGQYLYCVI
EEVKGNGGVVGLSIVHSEVSTAIATEEQNWTLNNLLPGLVVKAQVQKVTPVGLTLNFFSF
FTGLVDFMHLDPKKAGTYFSNQAVRACVLCVHPRTRAVRLSLRPVFLQPGRSLTRLSCQH
LGAVLDEVPVQNFFSKAGATFRLKDGALAYARLSHLSDSKTVFNAEAFKPGNTHKCRVID
YSQMDELALLSLRTSIIEAQYLRYHDIKPGALVEGTVLTVKSYGMLVKVGEQIRGLIPPM
HLADILMKNPEKKYRIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPAITRYADARPGL
QTHGFILRVKDCGCIVKFYNDVQGLVPKHELSAEYVPDPERVFYAGQVVKVVVLNCEPSK
ERMLLSFKLLGDPKKEHPGQNQKKRRTVSLGQLVDVKVLEKTKDGLEVAVLPHNIPAFLP
IPHLSDHVANGPLLYHWLQAGDTLHRVLCLSQSEGRVLLCRKPALVSTVEGGQDPKSFAE
IHPGMLLIGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKVTN
VDEEKQRMLLSLRLSDCGLGDLATTSLLLLSQCLEERQGVRSLMSNRDSVLIQTLAEMTP
GMVLDLEVQDVLEDGSVAFSEGPVPGLVLRASRYHRAGQEVEPGQKKKVVILNVDMLKLE
VHVSLCHDLVNRKAKKLRKGSEYQAIVQHLEESFAVASLVETGHLAAFSLTSHLNDTFRF
DSEKLQVGQGVSLTLKTTEPGVTGFLLAVEGPAAKRTVRQTRKDSETVDEDEEADPALVV
GAVKKHTLSIGDMVRGTVKSIKPTHVVVTLEDGIIGCIHASHILDDVPVGTSPTAKLKVG
KTVTARVIGGRDMKTFKFLPISHPRFIRTIPELSIRPSELEKDGRTALNTHSVSPLEKIK
QYQAGQTLICFLKKYNVVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRIGQALK
ATVVGPDSSKAFLCLSLIGPHKLEKGEVAMGRVVKVTPKEGLTVSFPFGKXFSIFHVSDS
YSETPLEDFVPQKVVRCYVLSATGHVLTLSLRSSRTNPETKSKITDPEINSIQDVQEGQL
LRGYVKCVQPHGVRFGLGPSVVGLARYPHVSQYSPSKKALFNRYLPEGKLLTAKVLRLNR
QKNLVELSFLPSDTGKPDVFPASLGLPLLKQEEREMEAEKKEHKEEEQKEEKEKKNQKRK
GKRKQQGQEEVQLPGKEKTEPQKPQAEKQGKRRRRESASEQDRVNKKQKEAALSEEDDSG
VEVYYREGEEEGEEMSVLPKEKPTRPAEVPRLQLSSGFVWDVGLDSLTPALPPRGESSDS
EDEDKPQQSTQKKSKKERMLEKQKAEKELSRIEEALMDPGRQPESADDFDRLLLSSPNSS
ILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTK
VFERAVQYNEPLKVFLHLADIYTKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRG
QAGASHRVMQRALECLPNKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWS
VYIDMTIKHGSQKEVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKAL
EYVEAKSSLLED
NT seq
5619 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaagcttcccccgagggggtacgagaaagacccacaaatcaaagaaagctttg
cagcagtcagttgaacaagacaacttatttgatatttctactgaagaggaatccaccaaa
aggaaaaagagccagaaagggccagcaaaaacaaaaaagttgaaaatcgagaagagagac
agcagcaagtctacaagagagaagtttgaaatccttagtattgagtccctgtgtgagggg
atgcggattttgggttgtgtgaaggaggtcaatgagctggaactggtgattagtctcccc
aatggactccggggcttcgtgcaagtgactgaaatctgtgatgcgtataccaaaaagctg
aatgagcaggtggctcaagaagagcctctgaaggacctggtcggcttgcctgaactcttc
tcacctgggatgctggtgagatgtgtggtgagcagtgtgggcatcacagagaggggcaaa
aagagtgtcaagttatctctgaaccccaaaaatgtcaacgaagtactaagtgctgaggcc
ctgaagcctggcatgctgctcacaggcactgtgtccagcctggaagaccatggctaccta
gtggacattggagttagtggggctagagcctttctgccactgcagaaagcccaggagtat
atccgacagaagaacaaaggtgctaaactaaaggtgggtcagtacctgtactgcgtcatt
gaagaggtgaaaggcaatggaggagttgttggtctgtctattgttcattctgaagtttct
actgccattgctactgaggagcaaaactggacccttaataacttgctgccaggactggtg
gtcaaagcccaggtacagaaggtgactccagttggccttacactaaacttcttctcattc
ttcactggcctggtcgactttatgcacctggatcccaagaaagctggaacatatttttca
aatcaagcagtaagggcctgtgttctctgtgtccatcctcggacccgggctgtgcggctg
agcctgcgtcccgtcttcctgcagcccgggcgctcactcacccggctgtcttgccagcac
ctgggagctgtgctggatgaggttcctgtccagaacttcttcagcaaggccggggccacc
ttcaggctgaaggatggggcgctggcctatgcccggctcagccatctctccgactctaag
actgtcttcaatgctgaggccttcaagccagggaacactcacaagtgtagagtcatcgat
tacagccaaatggatgaactggccttgctctctctgaggacgtctattattgaagctcag
taccttagataccatgacatcaagcctggggcattggtagagggcacagtgctgaccgta
aagtcatatgggatgctggtgaaggtgggtgagcaaatcaggggcctgatacctcccatg
cacctggctgacatcctgatgaagaatccagagaagaagtaccgcattggggatgaggtc
aagtgccgggttttgctttgtgatcctgaagccaagaagctaatgatgaccctgaagaaa
actctaattgagtctaaactgcctgccattacccgctatgccgatgccaggcctggtctg
cagacacacggcttcatcctcagggtcaaggactgcggctgcattgtgaagttctacaac
gatgtgcagggactggtgcccaagcatgagctcagtgccgagtatgtccctgacccagag
agggtcttttacgctggccaggtggtgaaggttgtggtgctgaactgcgagccatccaaa
gagaggatgcttttgtccttcaagctgttgggtgatccaaagaaagagcatccaggccag
aatcagaagaaaagaagaactgttagtctcggacagttggtggatgtgaaggttttagag
aagaccaaagatgggctggaggtggccgtcctgccccacaacatccctgctttcctcccc
attcctcatctgtcggaccatgtcgccaatggccctctattgtatcactggctccaggct
ggtgacacccttcacagggtactttgtctgagccagagtgagggacgtgtgctcctttgt
aggaagccagctttggtctccactgtggagggtggccaggatcctaagagcttcgcagaa
atccatcctggaatgctgctcatcggttttgtgaagagcatcaaggactacggggtgttc
gttcagttcccgtccggtcttagcggactggcccccaaagctatcatgagcgacaagttt
gtgacttccacaagtgaccactttgtcgaggggcagacggtggttgcaaaggtgaccaac
gtggatgaggagaagcagcgcatgctgctgtcgctgcggctgtcggactgtggtctggga
gacctggctaccaccagcctcctcctcctgagccagtgcctggaagagcggcagggtgtg
cgcagcctcatgagcaaccgagactctgtgttgatccagacgttggctgagatgaccccc
gggatggtccttgacctagaggtgcaggacgtgttggaggatggctctgtggcgttcagt
gagggccccgtgcccggcctggtcctgagggccagcagatatcatcgggcagggcaagag
gtggaacctgggcagaaaaagaaggttgtcatcttaaatgttgatatgttgaaattggag
gttcatgtttccctttgccacgatttggtgaatagaaaagctaaaaagctgaggaaaggc
agcgagtaccaggcaattgtgcagcacttggaggagtcctttgctgtcgcctccttggtg
gagactggccacctggcagctttctccctgacctctcacctcaatgacaccttccgcttt
gactcagagaagttgcaggtgggacagggtgtctccctaaccctcaagaccacagaacca
ggagtgactggttttcttttggctgttgaggggccagccgctaagaggactgtgagacag
acccggaaggactctgagacagtcgatgaggacgaggaagccgacccagctctggttgtg
ggggccgtaaagaagcacaccctgtccattggggacatggtcagaggcactgtcaagtct
attaagcccacccatgtggttgtgaccctggaagacggcatcatcggctgtattcacgcc
tcccacattctagatgatgttccagtgggcacatctcctactgccaagctgaaagttggg
aagacagtcactgcccgagtgattggtggacgagacatgaagacgttcaagtttctccca
ataagtcatcccagatttattcgaaccattccagagctgagtatccggccaagtgagctg
gagaaggatggccgcactgctctcaacactcactctgttagccccttggagaagattaaa
cagtaccaggctgggcagactttgatttgcttcttgaagaagtacaacgtggtcaagaaa
tggcttgaggtggagattgctccagacatccggggcaggattcctttgttgctcacgtct
ctcagcttcaaggttctgaaacatccagataagaagttccggattggtcaggccctgaag
gctactgtggttggcccagattcttccaaggccttcttgtgtctctcacttataggtcct
cacaagcttgagaagggggaagtggccatgggccgagtggtgaaggtgacccctaaggag
gggctgactgtctccttcccctttgggaagngattcagtatatttcatgtgagtgactcc
tactcagagacgcccctggaagacttcgtcccccagaaggttgtcaggtgttacgtcctg
tctgctacaggccacgtattgactctgtctctgcgatcgtccaggacaaacccggagacg
aagagcaaaataaccgatcctgagattaactccatccaggacgttcaggaagggcagctc
ctgcggggctatgtgaagtgtgtccagccgcatggtgtgcgctttggccttggcccctct
gttgtgggtttggcccgatatccgcatgtctcccagtacagtccatccaagaaagccctt
tttaacagatacctcccggaagggaagcttctcacagccaaggtcctgaggctgaaccgc
cagaagaacctggtagagctgtcgttcctccccagtgacactgggaagccggacgtgttt
cctgcctccctaggactgccacttctaaagcaagaggagagggaaatggaggcagaaaag
aaagagcacaaagaggaagagcagaaagaagagaaggagaagaagaatcagaaaaggaaa
gggaagaggaagcagcaggggcaggaggaggtgcagctgcccggcaaggagaagactgag
ccccagaaaccacaagcagagaagcagggcaagcggcggcgccgggagtctgcgagcgaa
caggacagagtgaacaagaagcagaaggaggctgctctgtcagaggaggacgacagtggt
gttgaagtgtattatcgggaaggagaagaggagggagaagagatgagtgtgctgcccaag
gagaagccgaccaggccagcagaagtgcctcggctacagctgtcctccggtttcgtctgg
gacgtggggctagactctctgaccccggccttaccacctcgaggagagagctcagacagc
gaggacgaggacaagccacagcagtccacgcagaagaaaagcaagaaggaaaggatgttg
gagaagcagaaggcagagaaagagctgtcccgcattgaggaggcgctgatggatcctggg
cgacagccagagtcggcagatgattttgaccgactcctgctgagctcccccaacagctcc
atcctgtggctgcagtacatggccttccacctacaggccacggaaatcgagaaggcccgg
gctgtggccgagagggctctcaagaccatttccttcagagaggagcaagagaagctgaac
gtgtgggtggccctgctgaatctggagaacatgtacggctctcaggagtccctgaccaag
gtctttgagcgggccgtgcagtacaatgagcctctcaaggtctttctccatctggctgac
atctacaccaagtcagagaaattccaggaagctggtgaactttacaaccggatgctgaag
agattcaggcaggagaaagctgtctggatcaaatatggcgcctttcttctgcggaggggc
caggctggggccagtcaccgtgtgatgcagcgagctctcgagtgtctgcccaataaagag
catgtggatgtgattgccaagtttgcccagctggagttccagctgggggacgcggaacgg
gccaaagccatttttgagaacacactgagcacctacccaaagcgcactgatgtctggtcg
gtttacatcgacatgaccattaagcatggcagccagaaggaagtccgggacatctttgaa
cgggtcattcatctcagcctggcccccaagcgaatgaagttcttcttcaagcgctacctg
gactatgagaaacaacatggcactgagaaggacgtgcaggcagtaaaggcgaaggccctg
gaatacgtggaagctaagagctccctgttggaggactag
DBGET
integrated database retrieval system
