Undibacterium sp. KW1: UNDKW_0789
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Entry
UNDKW_0789 CDS
T08678
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
und
Undibacterium sp. KW1
Brite
KEGG Orthology (KO) [BR:
und00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
und03016
]
UNDKW_0789 (rtcB)
Enzymes [BR:
und01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
UNDKW_0789 (rtcB)
Transfer RNA biogenesis [BR:
und03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
UNDKW_0789 (rtcB)
Prokaryotic type
tRNA splicing ligases
UNDKW_0789 (rtcB)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
BBB59062
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All DBs
Position
866578..867813
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AA seq
411 aa
AA seq
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MKHEDYDVIQYKDGRPIKMWTKGVPVEEEAKQQLANTSRLPFIYKHIAVMPDVHLGKGST
IGSVIPTLGAVIPAAVGVDIGCGMMAAKTTLFAHDLPDNLGPLRTAIEKAIPHGMSPKTR
GFKGRDKGSWENPPPSVDAAWAQLKDGFDEICLKTRLLKNTNNYLHLGTLGTGNHFVEIC
LDEANAVWFMLHSGSRGVGNAIGSHFIELAKQDMRTHFINLPDQDLSYLPEGTEHYKDYI
QAVGWAQKFARLNREVMMQNLIAAVRTVISKPFETHVEAVNCHHNYVQKEHHFGKDVLVT
RKGAVSARAGELGIIPGSMGAKSFIVRGKGNQESFHSCSHGAGRTMSRTAAKKLYTVADQ
IAATEGVECRKDADVIDEIPMAYKDIDAVMLAQSALVDVVHVLKQVVCVKG
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgaagcacgaagattacgatgtaatacagtacaaagatggtcgtcctatcaaaatgtgg
accaaaggtgttcctgttgaagaagaagccaagcagcaattggcgaatacctcccgtttg
cctttcatctacaaacatattgccgtgatgccagacgtgcatcttggtaagggttccact
atcggtagcgtgatacctaccctgggtgcggtgatcccggcggctgtaggtgtggatatc
ggttgtgggatgatggccgccaagaccaccctgttcgcccatgatctgccagataacctt
ggccctttgcgtactgccatagaaaaagccataccgcatggtatgtcgcctaagacgcgg
ggtttcaagggccgcgataaaggttcatgggaaaacccgccaccatccgtagatgcggct
tgggcgcagttgaaagacggttttgatgaaatctgtttgaaaaccagacttttaaaaaat
acgaataactaccttcacctgggaaccctgggtacaggtaaccattttgttgagatatgt
ctggatgaagccaatgccgtatggttcatgctgcactccggttcacgaggtgtaggtaat
gcaatcggtagccatttcattgaattggccaagcaggatatgcgtactcatttcattaat
ttgccagatcaggacttgtcttacctgccagaaggaaccgagcattacaaggactatatt
caggccgtgggttgggcgcagaaatttgcgcgtttgaaccgtgaagtgatgatgcagaat
ttgattgctgctgtacgtacagtgatcagcaaaccgttcgagactcacgttgaagcggta
aactgccaccataactatgtgcagaaagaacatcacttcggtaaggatgtattggtaacc
cgtaaaggtgcagtatctgcgcgtgccggtgagttggggatcattcctggttccatggga
gcaaaaagcttcattgtgcgtggtaaagggaatcaagaaagtttccatagctgcagccac
ggtgcaggccgtaccatgagccgtaccgcagccaagaagctatataccgttgctgatcag
atcgctgcaaccgaaggtgtggaatgccgtaaagatgccgatgtgattgatgaaatccct
atggcatataaagatatcgacgctgtgatgctggctcaatctgccctggtggatgttgtg
catgtattgaagcaggtagtgtgcgttaagggttga
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