Undibacterium sp. KW1: UNDKW_2382
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Entry
UNDKW_2382 CDS
T08678
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
und
Undibacterium sp. KW1
Pathway
und03410
Base excision repair
und03430
Mismatch repair
und03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
und00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
UNDKW_2382 (recJ)
03430 Mismatch repair
UNDKW_2382 (recJ)
03440 Homologous recombination
UNDKW_2382 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
und03400
]
UNDKW_2382 (recJ)
DNA repair and recombination proteins [BR:
und03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
UNDKW_2382 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
UNDKW_2382 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
UNDKW_2382 (recJ)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
BBB60655
LinkDB
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Position
complement(2637412..2639100)
Genome browser
AA seq
562 aa
AA seq
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MTRITVRPCPFRESEMLRQNGLHPVLARLYASRGATGEKELSTELNAMLPPAGLLHIDQA
AKFLADAIAQNKKLVIVADYDCDGATACAVGLRGLRMLGANVDYIVPNRFEYGYGLTPEI
VALTQKEKSPDVIVTVDNGIASVDGVAAANAQGIAVVVTDHHLPGDHLPDAAVIVNPNQP
ECGFPSKNLAGVGVMFYVLLALRAELRQRGVFDQQNQPKLDTLLDLVALGTVADVVKLDA
NNRILVAQGLKRMRAGRMCAGIAALFRVAGREPHNASPFDLGFALGPRLNAAGRLADMAL
GIECLTTDDEGRAWQIAQELNSINADRKDIEREMQDVALLHLDDFQPQDSNTITVFDEGW
HQGVIGIVASRLKDKFYRPTITFAPGGEGLIKGSGRSIPGFHLRDALDLVSKHAPSLIQK
FGGHAMAAGLTLRSEDFPTFQQAFEAVGKSWLQAHQLERVVETDGPLEEAYYTTDFIRLL
DTQVWGQGFPPPIFCDDFKLISQRILKERHLKLVLEKNKLRYDAIWFGHTDTLPENVHVA
FRLDANEYNGVTRVQLMVEHID
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgacacgcattacagtacgcccctgccctttccgtgaatctgaaatgttgcgccagaat
ggcttgcaccctgtactggcacgtctatacgcatcacgcggtgcaacaggtgaaaaagaa
ctcagcacagaattgaatgccatgttgccgcctgccgggctcttgcacatagaccaggct
gcaaagtttttagccgacgcaattgcacaaaacaaaaaactcgtcatcgtcgccgattac
gactgcgatggtgcgactgcctgtgcggtaggcttgcgcggcctgcgcatgctgggggca
aatgtcgattacatcgtcccgaatcgttttgaatatggttatggcctgacaccagaaatc
gttgcgctaacacaaaaagaaaagtcgccagacgtcatcgtcactgtcgataacggcatt
gccagtgtggatggtgtggcagcggccaatgcccagggcatagccgtggtcgtcaccgat
caccatttgcctggtgatcatttgccggatgctgctgtcatcgtcaatccaaatcagcct
gaatgcggctttcccagcaagaacctggccggtgtaggcgtcatgttttatgtcttgctg
gctttgcgggcagaactacgccagcgcggcgtgttcgaccagcaaaatcaacccaagctt
gatactttactggatctggttgcgctaggtacggttgctgacgtggttaaactggatgcc
aataaccgcatcctggtggcgcaaggcctgaagcgcatgcgcgctggccggatgtgtgcg
ggcatagctgcactattccgcgtagctggtcgcgaaccacacaatgccagcccttttgat
cttggcttcgctcttggccccagactcaacgctgctggtcgtctggctgacatggccctg
ggcatagaatgcctgaccacggatgacgaaggccgcgcctggcaaatcgcgcaggaatta
aacagcatcaatgctgaccgcaaagacatagaacgtgaaatgcaggatgtggcgctgctt
cacctggatgacttccagccacaagatagcaataccattaccgtgtttgatgaaggctgg
catcagggtgtcattggtatcgtcgcctcgcgcctgaaagacaagttttatcgccccacg
attacctttgcacctggaggcgagggattgatcaaaggttcgggtcgttccataccaggc
tttcatttgcgtgatgcgcttgatctggtatccaagcacgcacccagcctgatacaaaaa
tttggtggtcatgcaatggcagcaggtctgaccttgcggtctgaagacttcccgacattc
cagcaggcttttgaagccgtaggaaaaagctggttacaggcacaccagcttgagcgggtg
gtagaaactgatggcccactggaagaggcctattacacgacagactttatccgcctgctg
gatacgcaagtatgggggcaaggtttccctccccccatattttgcgatgactttaaactg
atatcgcagagaatattaaaagagcgccatttaaaactggtgctggagaaaaacaagctg
cgctatgatgcaatctggtttggccataccgacaccctgcctgaaaacgtccacgttgcc
ttcaggctcgatgccaatgaatacaatggtgtcaccagagtacagttaatggtggagcac
atagattaa
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