Undibacterium sp. KW1: UNDKW_2438
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Entry
UNDKW_2438 CDS
T08678
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
und
Undibacterium sp. KW1
Pathway
und03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
und00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
UNDKW_2438 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
und03400
]
UNDKW_2438 (mfd)
Enzymes [BR:
und01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
UNDKW_2438 (mfd)
DNA repair and recombination proteins [BR:
und03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
UNDKW_2438 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Cas3-like_C_2
SNF2-rel_dom
AAA_30
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
BBB60711
UniProt:
A0A6N4T535
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All DBs
Position
complement(2694213..2697644)
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AA seq
1143 aa
AA seq
DB search
MSFDFSKSLAKPGHKLALPNLHGSSDAYALAQAATALKADKRMLTIFVANPGDAQRLLDE
IPWFNAELRCHLLPDWETLPYDAFSPHQDLVSERLASLHEIQNGNCDVLLAPATTALLRM
APPSFLAAYTFFFKKGDRLDEAKLKTQLTLAGYSHVNQVMSPGEYSVRGGLIDLFPMGSA
LPYRLDLFGDTIETIRTFDADTQRSLYPVPEVRLLPGREFPMDEPARAAFRSRWRETFEG
DPSRSSIYKDIGNGIPSAGIEYYLPLFFEQTATLFDYLPEGPHFALIGDIDDAIRRFWND
TRSRYQFLKSDRERPVLAPETVFLRDEDFFAAMKPLARWTIAATDKAAAASEISSFLPDI
AVNRRADDPLTNLRSFLLQTDKRVMICAETLGRRETLQQYFTEYDIRLSLCEGYTDFATA
EAKLMLGVAPLHAGFVLADGLAFITEAELYAGSGKRIGRKKQEAVTQVEHMVRDLSELKI
GDPVVHSNHGIGRYMGLISMDLGEGETEFLHLEYAKDTKLYVPVSQLHVISRYSGASPDD
APLHSLGSGQWEKAKKKAAQQIRDTAAELLNLYARRAARQGHAFEYSARDYEAFADSFGF
DETPDQAAAITAVIGDMTSGKPMDRLICGDVGFGKTEVALRAAFVAVMGGKQVAILAPTT
LLAEQHAQTFADRFAAWPVKIAELSRFRSGKEISTAMKGMGDGTVDIVIGTHKLLSDDVK
FSRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATA
PQKRLAIKTFVRGEDDSVIREACLRELKRGGQVYFLHNEVETIENRKAMLEALLPEARVV
VAHGQMHERDLEKVMRDFVAQRHNILLCTTIIETGIDVPTANTIIMHRADKFGLAQLHQL
RGRVGRSHHQAYAYLLVHDVQSLTKQANRRLEAIQQMEELGSGFYLAMHDLEIRGAGEVL
GDNQSGEMHEIGFQMYSDMLSEAVRSLKNGKEPDLAAPLSTTTEINLHIPALLPNEFCGD
VHERLSIYKRLANCSSANGIDDMQEEMIDRFGKLPEPVKSLLETHRLRVAAKPLGIIKID
AHSEAATLQFEPKPPIDGMRIIELVQKNKNIKLNGQDKLRITAAMPDLASRVAQIKATIK
ALH
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgatttcagcaaatccttagcaaaacccggccataaactggcactccccaat
ttgcatggttcttccgatgcttatgccctggcgcaagcagcgacggcgctcaaggctgac
aagcgcatgctgaccatctttgtcgccaacccgggagatgcccagcgtctgctggatgaa
atcccctggtttaatgcagaactgcgctgccatttgttgccagactgggaaaccctgcct
tacgacgccttttcaccgcaccaagacctggtgtctgaacgcctggccagcttgcatgaa
atccagaatggcaattgcgatgtcttgctggcaccggcaactacggctttgctacgcatg
gcgccgccctctttcctcgcagcctacaccttcttttttaaaaaaggtgaccgtcttgac
gaggcgaagctaaaaacccagctgacactggcaggttatagtcatgtcaaccaggttatg
tctccaggcgaatattctgtgcgcggtggtttgatagacttgttccccatgggttcggcc
ctgccttatcgtctggacctgtttggcgacaccatagaaaccatacgcacctttgatgct
gatacccagcgttcgctctaccctgtgccagaagtacggttgctgccagggcgtgaattc
cctatggatgaaccagcccgtgcggccttccgtagccgctggcgcgaaacttttgagggt
gatccttcgcgttccagcatctataaagacataggcaatggcataccctcagccggtata
gaatattatctgccgctgttctttgaacaaaccgctaccctgtttgattatctgccagaa
ggaccgcattttgccttgataggcgatatcgatgatgctatccgacgcttttggaacgat
acaagatcacgctatcagtttttaaagtctgaccgcgaacgcccggtgctggcgccagaa
accgtatttttacgcgacgaagacttctttgcggcgatgaaaccgctcgcgcgctggact
attgcggctacagataaagccgctgctgcctcagaaatatcgagtttcctaccagatatt
gccgtcaatcgccgcgctgatgacccgctgacgaacttgcgctccttcttgctgcaaaca
gataaacgcgtcatgatttgcgccgaaacgctgggccggcgcgaaaccctgcagcaatat
ttcactgaatacgatatccgcctgagcctgtgcgaaggttataccgactttgccacggca
gaggccaagctgatgctgggggttgcgcctctgcacgctggctttgtgctggcagatgga
ctagccttcattaccgaagccgagctttatgccggtagtggcaagcgcataggccgtaaa
aaacaggaagctgttacgcaggtcgagcacatggtgcgcgatctgtcagagctcaaaatt
ggtgatcccgtcgtgcacagcaaccatggcataggccgctacatgggcctgatcagcatg
gatctgggcgaaggtgaaaccgaatttctacatctggaatatgccaaagataccaagctg
tatgtaccggtatcgcaattgcatgttatttcacgttactccggtgcttcgccagatgat
gcacctttgcacagcctgggttcaggccaatgggaaaaagccaagaaaaaagccgcgcaa
caaattcgcgatactgccgccgagctgttgaacctgtatgcccgtcgcgccgcgcgccag
ggtcatgcctttgaatattctgcgcgtgactacgaagcctttgcagacagctttggcttt
gatgaaacgccagaccaggccgccgccatcaccgccgtgattggagacatgacctcaggc
aagcccatggacaggctgatttgcggcgacgttggctttggcaagacagaggtcgccctg
cgtgccgcctttgtagcagtcatgggtggcaagcaagttgccatcctggcgcccaccacc
ctgctggcagagcaacatgcccagacttttgctgaccgctttgccgcctggccggtgaag
attgctgaactatcacgcttccgttctggcaaggaaatcagcaccgccatgaaaggcatg
ggcgacggcactgttgatatcgtcataggcacgcataaattactgtctgatgacgtcaaa
ttctcgcgccttggcctggtgattattgatgaagaacaccgctttggtgtacgccagaaa
gaagccttgaaggccttgcgtgcagaggtcgatgtattgacgctgacagcaacaccgata
ccacgtaccctgggcatggcactggaaggcttgcgtgacttttctgtcatcgcgactgca
ccgcaaaagcgtttggcaatcaagacatttgtacgcggcgaagatgattctgtcatccgc
gaagcctgcttgcgtgaactgaagcgtggtggtcaggtgtatttcctgcacaatgaagtg
gaaactattgaaaaccgcaaggccatgctggaagccctgctgccagaggcacgtgtcgtc
gtggcacatggccaaatgcatgagcgtgacctggaaaaagtcatgcgtgactttgtggcc
caacgccataatattttgctgtgtaccacgattatcgaaaccggcatcgacgtaccaacc
gccaataccatcatcatgcacagagccgataaatttggcctggcacagttacatcaattg
cgtggccgcgtcggtcgctcgcatcaccaggcctatgcctacttgctggtgcatgatgta
caaagcctgaccaagcaggcaaatcgtcgtctggaagctatccagcagatggaagaactg
ggtagcggcttttacctggccatgcatgacctggaaattcgcggtgctggtgaagtgctg
ggtgataaccagtctggcgaaatgcatgagataggcttccagatgtattccgacatgctc
agtgaagcagtacgctcactgaagaatggcaaagaacccgatctggctgcaccattgtcg
acgacgacagaaatcaacctgcacatccctgctctgctgccaaatgaattctgtggtgac
gtgcatgagcgcctgtccatctacaagcgcctggcgaattgcagtagcgccaatggcata
gatgacatgcaggaagaaatgatagaccgctttggcaaactgccagaacctgtaaaatcg
ctgctggaaacacacagactgcgcgttgccgccaagccgctgggcatcatcaagattgat
gcgcatagcgaagctgcgaccctgcagtttgaacccaaaccgccaatagatggcatgcgc
atcatagaactggtgcaaaaaaacaaaaacatcaagctcaatggtcaggacaaactgcgc
atcactgccgccatgcccgacctcgccagccgcgtagcccagatcaaggccaccatcaag
gcactgcactaa
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