Undibacterium sp. KW1: UNDKW_2789
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Entry
UNDKW_2789 CDS
T08678
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
und
Undibacterium sp. KW1
Pathway
und03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
und00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UNDKW_2789 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
und03019
]
UNDKW_2789 (rne)
03009 Ribosome biogenesis [BR:
und03009
]
UNDKW_2789 (rne)
Enzymes [BR:
und01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
UNDKW_2789 (rne)
Messenger RNA biogenesis [BR:
und03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
UNDKW_2789 (rne)
Ribosome biogenesis [BR:
und03009
]
Prokaryotic type
rRNA processing factors
UNDKW_2789 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
BBB61062
UniProt:
A0A6N4T410
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All DBs
Position
3095686..3098595
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AA seq
969 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVNGQKLIDIDIETAGRELRKSNIYKGVITRIEPSLEACFVNY
GEERHGFLPFKEVARTYFKEGVDVRNASIKEALREGQEIMVQVEKEERGNKGAALTSFIS
LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRETMDKLDLPGGMSVIARTAGIGRNVDELQ
WDLNYLMQLWRAIEGAGKSSPGAFLIYQESSLVIRAIRDYFQPDIGEILIDTDEIYEQAQ
QFMSHVMPDMVHRVKRYSDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSV
DVNSARSTRGGDIETTAFNTNLEAAEEVARQLRLRDLGGLIVIDFIDMENAKNQREVETR
LKDALRYDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQ
VLRIIQEEAMKENSAAIHVQVPVDVAAFLLNEKRGEILKIETRHRVTVILIPNKHLETPH
YKLDRLKTDDPRLEDHHASYAMAEQADTDIGYSKRQKEDVKPRQEAVVKSITPETAPIVE
RKEVAPVVVAPVAAPAEPGFFGKLFGFLFGKSEPAKVETPKPAEEKTAERDRNGRGPRNG
NSNSQRNRNRRNRDRDEREDRPAKAEKPEQEAVKPVAAENPRPPKAPKPPREERESQETR
RERQQRQRDERKENQAQESKEEPIHKHVDPAPVDVMPAAPQLEALESGAENDNSEQGEER
RRRRRRGGRNRNRRDRDGNEQVNEQGELPIDGSEIVDAITGSDVATVSTVVAPEVATPAA
PDNAANHVAEVSQPATFTEAVSTAAPAVAVTVAAAAPQEAISTPAVVAAPEAPVMAAPAE
ASPVVAPAVETATTVSTTEPVPVTEAIVSAPAEVIPQASAVEVAPVQVVTAPAISTPAAK
PQDATMPLESLHSMLKDAGLVLASTDPVKLQAAKAEAEKMVAPVRVPRERKPLPVVADEP
LVMVETRRS
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgctgttcaatgcgacgcagcaagaagagttgcgcgttgccattgtcaat
gggcaaaagctcattgacatagatatcgaaactgccggccgcgaactgcgcaaatcgaat
atctacaaaggcgtgatcactcgtatcgagccttcccttgaagcctgtttcgtcaactac
ggcgaagaacgtcacggtttcctccccttcaaagaagtcgcccgcacctactttaaagaa
ggtgtagacgtacgcaatgcttccattaaagaagcactgcgcgaaggccaggaaatcatg
gtccaggtcgaaaaagaagaacgtggcaacaagggtgcagccctgacctcgttcatttcc
ctggcaggccgctacctggttttgatgcctaacaacccgcgtggtggtggtgtttcccgt
cgcgtcgaaggtgaagaccgtcaggaattgcgcgaaaccatggacaaactggacttgcct
ggcggcatgtctgtgattgcccgcactgcaggcataggccgcaatgtcgatgaattgcaa
tgggacttgaattacctgatgcaactctggcgtgccattgaaggcgctggcaaatcttcc
ccgggtgcgttcctgatttatcaggaatcttcgctggtgatccgcgcgatccgcgactat
ttccagcctgatattggtgaaatcctcatcgataccgatgaaatttacgaacaggcccag
caattcatgagtcacgtgatgcccgacatggtgcatcgcgttaaacgttacagcgatgat
gtgccgctgttctcacgtttccagatcgaacaccagatcgaaactgcctattcccgtacc
gtaccactgccatctggcggcgcgatcgtaatcgatcacactgaagctttggtgtcggtt
gacgttaactcggcacgatccacccgtggtggcgatatcgaaacgacggctttcaatacc
aacctggaagccgctgaagaagtagcccgtcaattgcgcctgcgtgacctgggtggtttg
atcgtgatcgattttatcgacatggaaaacgccaagaaccagcgcgaagttgaaacccgc
ctcaaagatgccctgcgctatgaccgcgcacgtgtgcaaatgggcaaaatttcccgcttt
ggcctgatggaattgtcacgccagcgcctgcgcccttccctgtccgaaggcagccatgtg
acttgcccacgttgcaacggcactggccatatccgcgacaccgagtcttctgccctgcaa
gtcctgcgcattatccaggaagaggccatgaaggaaaactcagcagcaatccatgtccag
gtacctgtcgatgttgctgctttcctgctaaatgaaaaacgtggcgagatcctgaagata
gaaacgcgccaccgcgttacggtcatcctgatccccaacaagcatctggaaaccccacat
tacaagctggatcgcctgaaaacagatgatccacgcctcgaagaccaccacgccagctac
gccatggctgagcaggccgataccgacattggctacagcaaacgtcagaaagaagacgtc
aagccacgtcaggaagccgtcgtcaagagcattacgcctgaaactgcacctatcgttgaa
cgcaaggaagttgccccagtggtcgttgcaccagttgcagccccagcagaacctggcttc
ttcggcaagttgtttggtttcctgtttggtaaatctgagccagccaaggtagaaacacca
aaaccagcagaagaaaaaaccgccgaacgtgaccgcaatggccgcggcccgcgcaatgga
aatagtaacagccagcgtaaccgcaaccgccgcaaccgtgaccgtgatgagcgcgaagac
cgcccggcaaaggctgagaagccagagcaggaagcagtcaaaccggtagcagcggaaaat
ccacgcccaccaaaagcacctaagccaccgcgtgaagagcgggaatcgcaggaaactcgc
cgcgaacgtcagcaacgtcaacgcgacgagcgcaaggaaaaccaggctcaggaaagcaag
gaagaacctatccacaagcatgtagatccagcaccagttgatgtcatgccagcagctcca
cagctggaagcactggaatctggcgcagaaaacgacaatagcgagcaaggcgaagagcgt
cgtcgccgtcgccgtcgtggtggccgcaaccgcaaccgccgcgaccgcgatggtaacgag
caagtcaatgagcaaggcgaattgccgattgacggcagtgaaatagtcgatgccattaca
ggcagcgatgtggctacagtgagcacagtggtcgctcccgaagttgcgacaccagcagca
cctgacaacgcggcaaaccacgttgctgaagtcagccagcctgcgacctttactgaagca
gtaagcacagcggcacctgctgtcgcagtaaccgtagctgctgcggcaccacaggaagcc
atcagcacaccagcagttgttgcggctcctgaagctcctgtaatggctgctccagcagaa
gcaagcccggtggtggctcctgcagttgagactgcaacaacagtcagcacaactgaacca
gttccagttactgaggcaatcgtctctgctccggcagaagttattcctcaagcttctgca
gttgaagtagcaccagttcaggtagttacagcgccggcaatcagcacgccagcagcaaaa
ccacaggatgcgaccatgcctttggaatccctgcatagcatgctgaaagacgccggattg
gtattggccagcaccgacccagtgaaactgcaggccgccaaagcggaagcagaaaaaatg
gtggcaccggtacgcgttccccgcgagcgcaaaccattgccagttgttgctgatgagcca
ttggtgatggtggaaacacgtcgctcttga
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