Undibacterium sp. KW1: UNDKW_2825
Help
Entry
UNDKW_2825 CDS
T08678
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
und
Undibacterium sp. KW1
Brite
KEGG Orthology (KO) [BR:
und00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
und03019
]
UNDKW_2825 (hrpA)
Enzymes [BR:
und01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
UNDKW_2825 (hrpA)
Messenger RNA biogenesis [BR:
und03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
UNDKW_2825 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
NACHT
SRP54
AAA_30
ResIII
DUF5669
SLFN-g3_helicase
ABC_tran
AAA_25
TsaE
PhoH
AAA_23
Motif
Other DBs
NCBI-ProteinID:
BBB61098
UniProt:
A0A6N4T607
LinkDB
All DBs
Position
complement(3140735..3144901)
Genome browser
AA seq
1388 aa
AA seq
DB search
MSSNQTPKNSPKKATPGAIDGLSGLRELRQQLRETTAKSEVPENKPRNLNDGGAEQVRPV
RTQQARAQGPSQQSRPQPGRVTGTEAGRENGKNNNKQKTAVPVREEPALPFRNVLPPISF
PEELPVSGKRAEIAEALQKHQVIIVCGETGSGKTTQLPKICLELGRGQKGLIGHTQPRRI
AASSTAKRIAQELNSPLGEHVGFKVRFTDTLSKGASVKLMTDGILLAETQTDPLLKQYDT
IIIDEAHERSLNIDFLLGYLKQLLPKRRDLKIIITSATIDAQRFANHFADARGGEPKPAP
VIEVSGRLYPVEVRYRPIQDTEKDKERDLMTAITDAVDELCRVGSGDVLVFLPGEREIRD
AAEALRKHHPPHVEILPLFARLSAQEQERVFKTSNARRIVLATNVAETSLTVPGIRYVVD
AGLARVKRYSYRNKVEQLQIEAVAQSAANQRAGRCGRVAAGVCIRLYDEQDYLQRPKFTE
PEILRSSLAAVILRMKSLRLTDVETFPFIEPPPGRAIADGYQLLQELGAMDEVNQLTPVG
RQLAKLPLDPRVGRMILAARDNQALQEVLIIAAALSVQDPRDRPMDAQAAADMAHKKFAD
EKSEFQSYLKIWNWFEDAIEHKKTNRQLQDNCRSNFLSQMRLREWREVHSQLLTIVKEQG
WRLNEAPATYEQLHLSLLTGLLGNIGYKSDEEAHYLGARGIKFYIWPGSTLAKKAGRWIM
AAELVDTTRLYGRCIAQINPEWLEKIGEHLLKKSYGEPRWEKRAGQVSAFERATLYGLVV
YSQRRTQYGLTHPVEAREMFIRDALVEGEFDTRAPFFAYNQKLVREIENLEHKSRRLDVL
VDEELIVAFYDQHLPADVWNAILFEQWHKEATKANPKLLYLNKDELMRHEAAGVTTDLFP
KTMQVSGVALQLSYHFEPGSPRDGVTLTVPLFSLNQVSADRCEWLVPGMLKEKVHLLIKS
LPQKIRRHCVPIPEYAAGFCERNDFGKGNFLDAVIADIREQKGLLCKTTDFKFETVPVHL
TMNFKVVDEHGRQLEMGRNLASLRAEFGGQARESFQRIASAEKLALLDTNPVAAKPAVVA
EEKSIRSTGKPVTANVLTSAPVPAFKQENLTAWTFDSLPELLEVQQGKQTLIGYPALVDK
LTHCHIEVFDDPDEAARVHRIGLRRLFALQLKEQIKFLEKNIPGLQQMGMQFMALGSQEE
LRDQIIQVAIESAFLQNPLPANSGEFNKRRDEGKARLNLLANEIARTAAQILAEYYGLPK
KLQGIKAHAQAAADMQTQLQMLVTKHFISENDFTQLSHFPRYLKAITVRMDKLRADPARD
QKLLAEWNSVAQAWQRHPRKTGPDADPKLLEFRWLLEELRVSLFAQELRTPMPVSVKRLQ
KVWESLQR
NT seq
4167 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcaaatcaaacacctaaaaactcccctaagaaagcaacgcccggtgcgatagat
ggtttatcgggattgcgagagcttcgacaacagttgcgtgaaactaccgcgaagtctgaa
gtgcctgaaaacaaaccgcgcaatctcaatgatggtggcgcagaacaagtgcgccctgta
agaacgcagcaagcaagggcgcaaggacctagtcagcagtcaaggcctcagccggggcgt
gtgactggcacagaggctggccgggaaaacggcaaaaacaataacaaacaaaaaacagcc
gtgccagtaagggaagagccagctctgccttttcgcaatgtcttgccacccattagcttc
cccgaagaattaccggtgtccggcaagcgtgcagaaattgccgaggctttgcaaaaacat
caggttataattgtctgtggtgaaaccggctcaggcaagaccacgcaattaccaaagatt
tgcctggaactgggacgtgggcaaaaggggttgataggccacacccagccacgccgtatt
gctgcgtcatcaacggccaagcgtattgcacaggaattgaattctcctttaggtgagcat
gtcggctttaaagtccgtttcaccgatactttgagcaagggcgcatcggtcaagctgatg
accgacggcatcttgctggcagaaacccagactgatccactgctcaaacaatatgacacc
atcatcatcgatgaggcacatgagcgcagcctgaatattgacttcctgctcggttaccta
aaacaattgctgcccaagcgccgtgacctgaagatcatcattacttcagccacgatagat
gcgcagcgctttgccaatcattttgctgatgctcgtggtggcgaacccaagcctgctcct
gtgatagaagtgtcaggccgcttgtaccctgtagaagtacgctatcgtccgatacaagat
acagaaaaagataaagagcgtgatttgatgacggcgattaccgacgccgttgatgaatta
tgccgcgtaggttctggcgatgtactcgtattcttgccaggcgagcgtgaaattcgtgat
gctgctgaagccctgcgcaagcatcatccaccgcatgtagagattttgccgctgtttgcc
cgcctgtcagcacaagaacaggagcgggtattcaagacttcaaatgcgcgtcgcatcgtg
ctggccacgaacgtggcagaaacttcgctgaccgtacctggcatacgttatgtcgtcgat
gctggcctggcgcgtgtcaaacgttacagctaccgtaacaaagtcgaacaattgcagata
gaagcggttgcccagtctgctgcgaatcagcgtgccggtcgttgcgggcgtgttgcggct
ggtgtttgcatacgtttgtacgatgagcaggattatctgcaaaggccaaaatttacagag
cctgagattttgcgctcgtcactggctgctgtcatcttgcgtatgaaatctctgcgcctg
accgatgtagaaactttcccattcatagagccgccgcctggcagggcgattgctgacggt
tatcagctcttgcaggaactgggggccatggacgaagtcaatcaattgacaccagtaggc
cgacagctcgccaaactgccgctggacccgcgtgtgggccgcatgattttggctgcgcgt
gacaaccaggccttgcaggaagtgttgatcattgctgccgccttgtcggtgcaagatccg
cgtgatcgccccatggatgcgcaggccgctgccgacatggcgcacaagaaatttgccgat
gaaaaatctgaatttcagtcttacctgaaaatttggaactggtttgaagatgccatcgaa
cataaaaagaccaatcgacagttgcaagataattgccgctccaatttcctgagccagatg
cgcttgcgcgaatggcgtgaagtgcattcgcaattgctgacgatagtaaaagagcagggc
tggcgcttgaatgaggcacctgccacctacgagcaattgcatctctccttgctgacgggt
ttgctgggtaatataggctataagtcagatgaagaagcacattacctgggtgcgcgtggt
atcaaattttatatctggccgggttccactctcgctaaaaaagccgggcgctggatcatg
gcggctgagctggtggataccacacgcctgtatggtcgttgcattgcacagatcaatccg
gaatggctggagaagataggcgaacatctgcttaaaaaatcttatggcgagccgcgttgg
gaaaaacgtgccggacaggtatctgcctttgaacgcgctaccctgtatggtctggtggta
tatagccagcgtcgtacacagtatggtttgacgcaccctgttgaggcgcgcgagatgttc
atccgtgatgccctggtcgaaggcgagtttgatacccgtgcgcctttcttcgcgtataac
cagaaactggtacgcgagatagaaaaccttgaacataaatcacgccgccttgatgtgctg
gtcgatgaagagctgatcgtagctttttatgatcaacacttgccagcagatgtctggaat
gccatactgtttgagcaatggcacaaagaagcgaccaaggccaatcccaaactcttgtac
ctgaacaaagacgagctgatgcgccatgaagcagcaggcgtgaccacggatttgttcccc
aaaaccatgcaggtctcgggtgtggctttgcagctcagttatcactttgagccgggcagc
ccgcgcgacggtgtgaccctgactgtgcctttattttctctgaatcaggtgtcggcagac
cggtgcgaatggctggtgccaggtatgctcaaggaaaaagtacatttgctgatcaagtcc
ttgccgcaaaagatacgtcgtcattgtgtgcctatcccggaatatgcagcaggcttttgc
gagcgcaatgatttcggtaagggcaatttccttgatgccgtgattgctgatatacgcgaa
caaaaaggcttgctgtgcaagaccacggatttcaaattcgagaccgtgcccgtgcatttg
acgatgaatttcaaagtcgttgatgaacatggccgtcaactggaaatgggacgtaacctg
gccagcttgcgcgctgagtttggtggacaggcacgcgagagtttccagcgtattgccagt
gcagagaaactggcgctgctggataccaatcctgttgccgccaaaccggctgttgtcgca
gaagaaaagtcgatccgtagtactggaaaacctgtaactgcgaatgtcctgaccagtgct
ccggtaccggcattcaaacaggaaaatctgacagcatggacttttgacagtctgccagaa
ttgctggaagtccagcaaggcaagcaaactttgattggctatccagcactggtcgataaa
ctcacgcattgccatatcgaagtgtttgatgacccggatgaggccgcgcgcgtacatcgc
ataggcttgcgtcgtctgtttgccttgcaattaaaagagcagatcaagttcctggaaaaa
aatatcccaggcttgcagcaaatgggcatgcagttcatggcgctgggttcgcaggaagaa
ttgcgggatcagattatccaggtcgcgatagagagtgctttcctgcaaaatcccttgcct
gccaattcaggtgaattcaataagcgacgagatgaaggcaaagctagattgaatttactg
gcgaatgaaattgcccgtactgccgcgcaaatactggctgaatactacggcttgcccaag
aagctgcaaggcatcaaggcgcatgcacaggctgctgccgacatgcagacgcaattgcag
atgctggtgaccaagcactttatttcggaaaatgatttcacccagttgtcgcatttcccg
cgttacctgaaagcgattacagtacgcatggacaagttgcgtgcagaccccgcgcgtgac
cagaagttgctggcagagtggaatagcgtggctcaggcctggcagcgtcatccacgcaag
acagggccggacgctgatccaaaactgctggaattccgttggttgctggaagaactcagg
gtatctttgtttgcccaggagttgcgtacgcccatgcctgtgtccgtcaagcgcttgcaa
aaagtgtgggagagtttgcagcgatag
DBGET
integrated database retrieval system
