Undibacterium sp. YM2: UNDYM_0319
Help
Entry
UNDYM_0319 CDS
T10101
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
uny Undibacterium sp. YM2
Pathway
uny03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
uny00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
UNDYM_0319 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
uny03021
]
UNDYM_0319 (rpoB)
03400 DNA repair and recombination proteins [BR:
uny03400
]
UNDYM_0319 (rpoB)
Enzymes [BR:
uny01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
UNDYM_0319 (rpoB)
Transcription machinery [BR:
uny03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
UNDYM_0319 (rpoB)
DNA repair and recombination proteins [BR:
uny03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
UNDYM_0319 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
BBB64572
LinkDB
All DBs
Position
327177..331283
Genome browser
AA seq
1368 aa
AA seq
DB search
MHYSFTEKKRIRKSFAKRANVHNVPFLLATQIESYQSFLQEDRTPPTRKNEGLQSAFTSI
FPIVSHNGFARLEFLSYVLGDPAFDVKECQLRGLTYASPLRAKVRLVILDKESPTKPVVK
EMKEQEVYMGELPLMTTTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSAR
IIPYRGSWLDFEFDPKDILFFRIDRRRKMPVTILLRAIGMSNEQILANFFVFDNFNLHSD
GAEMEFVAERLRGEVARFDISDKSGKVIVAKDKRINAKHVREIEAGGIKHISVPEDYLLG
RVLAKNIVDADTGEVIANANDELTEELLGRLRDAKVTDIQTLYTNDLDQGAYISQTLRAD
DTADQMAARVAIYRMMRPGEPPTEDSVEALFNGLFYSEDRYDLSAVGRMKFNRRIGRDEL
TGAMTLSNEDVLAVIKILVELRNGRGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVERA
VKERLGQAEADNLMPHDLINSKPISAAIREFFGSSQLSQFMDQTNPLSEITHKRRISALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFLETPYRKV
VDSKITSQIDYLSAIEEGRYIIAQANATIDGEGKLIDELVSAREAGETILVSPERIQYMD
VATGQVVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKAFVGTGIERTVAVDSGT
TVQALRGGKVDYIDAGRIVIRVNDAEAQAGEVGVDIYNLIKYTRSNQNTNINQRPIVKVG
DLVAKGDVLADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISEKVVADDRYTSIHIE
ELSVVARDTKLGAEEITRDISNLAENQLARLDESGIVYIGAEVTAGDTLVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMVGTVIDVQVFTREGIQRDKRAQQIIDDELK
RYRLDLNDQLRIVEGDAFERLERMLDGKIADGGPAKLAKGTKITREYLASVDKYHWFDIR
LASDEAANALVAMKDSIAEKRHQFDLAFEEKRTKLTQGDELPPGVQKMVKVYLAVKRRLQ
PGDKMAGRHGNKGVVSRIVPIEDMPYMADGTPADIVLNPLGVPSRMNVGQVLEVHLGWAA
KGLGLRIGEMLKAKAKVEELREFLKKIYNESGKKEDIDSFSDAEILELTNNLKNGVPFAT
PVFDGAHESEIRRMLDLAFPDHIAAQLGMTPSKNQVTLFDGRTGEAFERKVTLGYMHVLK
LHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVK
SDDVNGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLERS
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atgcactactcatttactgagaagaagcgtattcgtaaatcttttgcgaagcgcgccaac
gtccacaacgttccgttcttgctggcgactcaaatcgagtcgtaccagagcttcttacaa
gaagacagaacaccgccaactcgtaaaaacgagggcttgcagtctgccttcacctcgatt
ttccctattgtttcgcacaatggcttcgcacgtcttgaattcctgtcctacgttttaggc
gatcctgcgttcgacgtcaaggaatgtcaattgcgtggcctgacttatgcttcgcctttg
cgtgcaaaagtccgcctggtcattctggacaaggaatcaccaaccaagccggttgtcaaa
gaaatgaaagaacaggaagtctacatgggcgaattgcctttgatgacaaccactggttct
tttgtcatcaacggtactgagcgcgttatcgtgtcccagttgcaccgttcccctggcgtg
ttctttgaacatgaccgcggcaagacacattcttccggtaaattgctgttctcggcaagg
atcattccttaccgtggttcatggctggatttcgaattcgatcctaaagatatcctgttc
ttccgtattgaccgtcgtcgcaagatgccagtcactatcctgctgcgcgccataggcatg
agcaatgaacagatcctggctaacttctttgtcttcgataatttcaacctgcacagtgat
ggcgcagaaatggaattcgttgcagaacgtctgcgtggtgaagttgcccgttttgacatc
agcgacaaatccggcaaagtcatcgtagccaaggacaagcgtatcaatgccaagcatgta
cgtgaaatcgaagccggtggcatcaagcacatttccgtgcctgaagactacctgctgggt
cgcgtcctggccaagaacatcgttgatgcagacactggtgaagtcattgccaatgccaat
gatgagctgacagaagaattgctgggtcgtttgcgcgacgccaaagtcactgatatccag
actttgtacaccaatgacctggatcagggtgcttacatttcccagactctgcgtgctgat
gatacagctgaccagatggctgcccgcgttgccatctaccgcatgatgcgtcctggcgaa
ccaccaacagaagattctgttgaagccctgttcaatggcttgttctatagcgaagaccgt
tacgatctgtccgcagtcggccgcatgaagttcaaccgccgtatcggccgtgatgaactg
acaggtgccatgactttgtcgaacgaagatgtactggccgtgatcaagattctggttgag
ctgcgcaatggccgtggcgaagtcgatgatatcgatcacttgggtaaccgtcgcgtacgt
tgcgttggtgaattggctgaaaaccagttccgtgctggtctggtacgtgttgaacgtgct
gtcaaagagcgtctgggtcaggctgaagccgacaacctgatgccgcatgacctgatcaac
tccaagcctatctctgctgcgattcgtgagttcttcggttcttcacaattgtcccagttt
atggatcagaccaacccattgtcagaaatcacgcacaagcgtcgtatttccgccctcgga
cctggtggtttgacacgtgagcgcgccggctttgaagtccgcgacgttcatccaacccac
tatggccgcgtctgcccgattgagacacctgagggaccaaacattggtctgatcaactcg
ctggctctgtatgctcgtctgaacgaatacggtttcctggaaacaccataccgtaaagtg
gttgacagcaaaatcacatcccagatcgattacctgtctgcgattgaagaaggtcgttac
atcatcgcccaggcgaatgcgacgatcgatggcgaaggcaaactgatcgatgaactggtc
tctgcccgtgaagctggcgaaacgatcctggtatccccagagcgtatccagtacatggac
gtggcgactggtcaggtggtttctgttgcggcatccttgatcccgttcctcgaacacgat
gatgcgaaccgtgcgttgatgggtgccaacatgcaacgtcaagccgttccttgcttgcgt
ccagaaaaagcattcgttggtacaggtatcgaacgtactgtggcagttgactccggtaca
accgtacaggcactgcgtggcggtaaggttgattacatcgatgcgggccgtatcgttatt
cgtgtgaatgatgctgaagcacaggcaggtgaagtcggtgtggatatctacaacctcatc
aagtacacccgttccaaccagaacaccaatatcaaccaacgtcctatcgtcaaagttggc
gatctggtcgccaaaggtgacgtattggccgacggcgcatcgacagatctgggcgaattg
gccctgggtcagaacatgctggtcgcgttcatgccttggaatggttataacttcgaagat
tcgatcctgatctctgaaaaagtggtggctgatgaccgctatacctcgatccatatcgaa
gagttgtcggtggttgcccgtgataccaagctgggtgcggaagaaatcacacgtgatatt
tccaatctggcagaaaaccaactggcacgtctggatgagtccggtatcgtctacatcggt
gctgaagtaacagccggtgataccctggtcggtaaagtgacaccaaaaggtgaaactcaa
ctgacaccagaagaaaaactgctgcgcgccattttcggtgaaaaagcttctgacgttaaa
gatacatccctgcgcgtgccttccggcatggtaggtacagttatcgacgtacaagtgttc
acacgcgaaggtatacaacgcgacaaacgtgcacaacagattatcgatgatgaattgaag
cgttatcgcctcgatctgaacgatcagttgcgtattgttgaaggcgatgcatttgagcgt
ctggaacgtatgctggatggcaagatcgctgacggcggcccggccaagctggctaaaggc
actaagatcaccagagaatatctggccagcgtggataaataccactggttcgatattcgc
ctggcatctgatgaagcagccaatgcattggtcgcgatgaaagattccatcgctgaaaaa
cgtcatcagttcgatctggcttttgaagaaaaacgtaccaagctgacgcaaggcgatgaa
ttgccgccaggcgtacaaaaaatggtcaaggtttacctggctgttaaacgtcgcctgcaa
cctggtgacaagatggcgggtcgtcacggtaacaagggtgtggtttcccgtatcgtgcct
atcgaagacatgccttacatggctgacggtacaccggcagacatcgtgttgaacccattg
ggtgttccatcacgtatgaacgttggtcaggttctggaagtgcatctgggctgggcagct
aaaggcctgggcttgcgcataggcgaaatgctgaaagccaaggccaaggttgaagaactg
cgtgaattcctgaagaagatttataacgaatctggcaagaaggaagacatcgacagtttc
tccgatgccgagatcctggaattgacgaacaacctgaaaaatggcgtgccatttgctaca
ccagtgtttgacggtgcgcatgaaagcgaaatccgccgcatgctggatctggccttccct
gaccatatcgccgcacaactgggtatgacaccatcgaaaaaccaggtcaccctgtttgat
ggccgtaccggtgaagcgttcgagcgtaaagtcacactgggctacatgcacgtactgaaa
ttgcaccatctggttgatgacaagatgcatgcacgttcgaccggtccttactctctggtc
acgcaacaacctctgggcggtaaagcgcagttcggtggtcagcgtttcggtgagatggaa
gtctgggcactggaagcttacggcgcgtcttatgtcttgcaagagatgttgaccgtcaag
tccgatgacgtgaatggccgtaccaaagtgtatgaaaacctggtcaagggtgaccatgtg
atcgacgccggcatgccagagtccttcaacgttctggtcaaagaaatccgctctctgggt
atcgatatcgatctcgaacgcagctaa
DBGET
integrated database retrieval system
