Undibacterium sp. YM2: UNDYM_0775
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Entry
UNDYM_0775 CDS
T10101
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
uny Undibacterium sp. YM2
Brite
KEGG Orthology (KO) [BR:
uny00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
uny03016
]
UNDYM_0775 (rtcB)
Enzymes [BR:
uny01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
UNDYM_0775 (rtcB)
Transfer RNA biogenesis [BR:
uny03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
UNDYM_0775 (rtcB)
Prokaryotic type
tRNA splicing ligases
UNDYM_0775 (rtcB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BBB65028
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All DBs
Position
831823..833031
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AA seq
402 aa
AA seq
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MPIAKSLHKAKVPVHIFTDDVDHTAIQQLLNIASLHIVHPHVAAMPDVHAGVGATVGSVI
PTRAAIIPGAVGVDIGCGINAVRTTLTASQLPDNLAKLRSALEAEIPVGFRQHAWNRMRG
SALVRVGKPLNDRLDKIVAKHKSIMRMLPKFYQTWICQLGTLGGGNHFIEVCIDEEQRVW
IMLHSGSRGVGSVIGKHFIWAARKEMWRHQIHLPDKDLSYFTEGSELFDDYVEAVQWAQD
YALANRSEMMRRALAVLEKEVTSFKLDGEAINCHHNYVSQETHNNENLFITRKGAISARM
GEMGIIPGSMGARSYIVRGKGNPESFCSCSHGAGRKMSRGEAREMFDADDLAAQTQGIEC
RKDKGVVDEIPAAYKDIDAVMAHQHDLVEVVHTLRQVVCVKG
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgcctatagctaagagtttgcacaaggccaaagtgcctgtgcatatatttacggatgat
gttgatcacactgcgatacagcagttgctcaatatcgccagtttacacatcgttcatccc
cacgtagctgccatgcccgatgtgcatgcgggtgtgggggccacggtaggcagtgtgata
cctacccgtgcagccatcatcccgggtgcagtgggtgtggacataggttgtggcataaat
gcggtgcgcacgactttgactgccagccagctgccagataatctggcgaaactgcgcagt
gccctggaagccgagatacctgttggctttcgccagcatgcctggaaccggatgcgtggg
tctgccctggtcagggtgggcaagcccttgaatgacaggctggacaagatcgttgccaag
cacaagagcatcatgcgtatgctgcccaagttttaccaaacctggatatgccagttaggt
accctgggtgggggtaatcatttcattgaagtgtgtatcgatgaagagcagcgcgtctgg
atcatgttgcattccggctcacgtggtgtgggcagtgtcatcggcaagcattttatctgg
gctgcacgcaaggaaatgtggcggcaccagatacatttgccggacaaggacttgtcttat
tttactgaaggctcggaattgtttgatgactatgtcgaagcggtgcagtgggcgcaggat
tatgccttggctaaccgcagtgaaatgatgcgcagggcgcttgctgtgcttgaaaaagaa
gtgaccagcttcaagctggatggtgaagccatcaattgtcatcacaattatgtgtcgcaa
gaaacgcataataatgaaaatctctttattacccgcaagggagcaatttctgcccgcatg
ggtgagatggggattattcctggcagtatgggggcacgtagttatatcgtcaggggcaag
ggtaatcctgaatcattctgctcctgttctcacggtgcagggcgcaagatgagccggggt
gaggcgagggagatgtttgatgctgatgatctggcagcccagactcagggtatagaatgt
cgcaaggataagggtgtcgtggatgagattccggcagcatataaggatatcgatgcagtc
atggcgcatcagcatgatctggttgaagttgtgcataccttgcgccaggtcgtctgtgtg
aaaggatag
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