Undibacterium sp. YM2: UNDYM_2209
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Entry
UNDYM_2209 CDS
T10101
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
uny Undibacterium sp. YM2
Brite
KEGG Orthology (KO) [BR:
uny00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
uny03009
]
UNDYM_2209 (rlmD)
Enzymes [BR:
uny01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
UNDYM_2209 (rlmD)
Ribosome biogenesis [BR:
uny03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
UNDYM_2209 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
RrnaAD
Methyltransf_25
TRM5-TYW2_MTfase
MTS
Methyltransf_32
Methyltransf_15
Methyltrans_SAM
UPF0020
Cons_hypoth95
TRAM
Methyltr_RsmB-F
PCMT
Methyltransf_11
DOT1
Motif
Other DBs
NCBI-ProteinID:
BBB66462
UniProt:
A0A809QB43
LinkDB
All DBs
Position
2427552..2428886
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AA seq
444 aa
AA seq
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MNTIEIRSLDMDARGVGNLQNEDGSTGKVVFVDGALPGELVEFSTYKKKASWEAATMMSL
VRESSQRVEPKCEFFGTCGGCSMQHLDASAQVAMKQRVLEDNLWHIGKVKSEIMLRPIIG
PTWGYRYRARLSVRHVIKKGTVLVGFHEKKSRYVANMETCDILPAHVSAMLMPLRGLVAS
LSIVEALPQIELAIGEGVTAMVLRIMAPLTKEDEVKLKAFADQYQVQWWLQTKGPETATP
YYPATSELHYLLPEFGVKMPFKPTDFTQVNHHINRVLVARALRMLDVQKDERIADLFCGL
GNFTLPIATLAREVVGIEGSDTLTERALENAKHNGLAAKTSFSTRNLFEVTAQDFVKLGK
FDRFLIDPPRDGAMAVCQALIDLGDIAPELKPKRLVYVSCSPSTLARDAGMLVNQAGYRL
SSAGVINMFPHTSHVESMAVFDLI
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgaatacaatagaaattcgctctttggatatggacgcacgtggcgtcggtaacttgcaa
aatgaagatggttccactggtaaggtggtgtttgttgatggtgcgctgccaggtgagttg
gttgagtttagtacctacaaaaagaaggccagttgggaagctgcaaccatgatgagcctg
gtacgcgaatcttcgcaaagggtggagcctaaatgtgaattttttggcacttgcggcggt
tgttccatgcagcatctggatgccagcgcccaggttgccatgaagcagcgtgtgctggaa
gacaacctctggcatattggaaaggtcaaatccgaaatcatgctccggcccatcataggt
ccgacctggggttaccgctaccgcgcacgtctgtctgtgcgccatgtgatcaaaaagggc
acggtacttgttggttttcatgagaaaaaatcgcgttatgtcgcgaatatggaaacctgt
gacatcttgcctgcgcatgtgtccgccatgctaatgcctttgcgtggcctggtggcttcg
ctgtccatagttgaagccttgccgcaaattgaactggcaataggtgagggtgtgactgcc
atggtattgcgcatcatggcaccattgaccaaagaagatgaagtgaagttgaaggcattt
gctgatcaatatcaggtgcaatggtggttgcaaaccaaggggccggaaacagccacgcca
tactaccctgcgactagcgaattgcattatctgttgccagaatttggcgtcaaaatgccg
ttcaagcccactgatttcactcaggtgaaccatcatatcaaccgggtactggtcgcacgc
gccttgcgcatgctggatgtgcaaaaagatgagcgtatcgctgatctgttctgcggtctg
ggcaatttcaccctgcctatcgccacgctggcaagagaggttgtgggtatagagggtagt
gatactttgactgagcgtgctctggaaaatgcaaaacacaatggtctggcggccaagacc
tcgttcagtacgcgcaatctgtttgaggtgacggcacaagacttcgtcaagcttggtaaa
tttgatcgtttcctgatcgatccgcctcgcgatggcgccatggctgtctgtcaggctttg
attgatctgggtgatatcgcgcctgaattaaagcccaagcgtctggtctatgtttcatgc
agcccttccaccctggccagggatgctggcatgctggtgaatcaggctggttatcgtctt
agcagtgctggcgtcattaacatgttcccgcatacctctcacgtggaatccatggcagtt
tttgatctgatctag
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