Undibacterium sp. YM2: UNDYM_2428
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Entry
UNDYM_2428 CDS
T10101
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
uny Undibacterium sp. YM2
Pathway
uny03410
Base excision repair
uny03430
Mismatch repair
uny03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
uny00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
UNDYM_2428 (recJ)
03430 Mismatch repair
UNDYM_2428 (recJ)
03440 Homologous recombination
UNDYM_2428 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
uny03400
]
UNDYM_2428 (recJ)
DNA repair and recombination proteins [BR:
uny03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
UNDYM_2428 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
UNDYM_2428 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
UNDYM_2428 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
BBB66681
UniProt:
A0A809QUN0
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Position
complement(2660547..2662235)
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AA seq
562 aa
AA seq
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MTRITVRPCPFRESEMLRQNGLHPVLARLYASRGATAEKELSTELNAMLPPAGLLHIDQA
AKFLADAIAQNKKLVIVADYDCDGATACAVGLRGLRMLGANVDYIVPNRFEYGYGLTPEI
VALTQKEKSPDVIVTVDNGIASVDGVAAANAQGIAVVVTDHHLPGDHLPDAAVIVNPNQP
ECGFPSKNLAGVGVMFYVLLALRAELRQRGVFDQQNQPKLDTLLDLVALGTVADVVKLDA
NNRILVAQGLKRMRAGRMCAGIAALFRVAGREPHNASPFDLGFALGPRLNAAGRLADMAL
GIECLTTDDEGRAWQIAQELNSINADRKDIEREMQDVALLHLDDFQPQDSNTITVFDESW
HQGVIGIVASRLKDKFYRPTITFAPGGEGLIKGSGRSIPGFHLRDALDLVSKHAPSLIQK
FGGHAMAAGLTLRSEDFPAFQQAFEAVGKSWLQAHQLERVVETDGPLEEAYYTTDFIRLL
DTQVWGQGFPPPIFCDDFKLISQRILKERHLKLVLEKNKLRYDAIWFGHTDTLPENVHVA
FRLDANEYNGVTRVQLMVEHID
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgacacgcattacagtacgcccctgccctttccgtgaatctgaaatgctgcgccagaat
ggcctgcatcccgtattggcgcgcctgtatgcctcacgcggtgcaacagcagaaaaagaa
ctcagcaccgagttgaatgccatgctgccgcctgccgggcttttgcatatagaccaggct
gcgaaatttttggcagatgccatcgcgcaaaataaaaaactcgtcatcgtcgccgattac
gactgcgatggtgcgactgcctgtgcggtaggtttgcgcggcttgcgcatgctgggagca
aatgttgattacattgtcccgaatcgttttgaatatggctatggcctgacgccagaaatc
gtggcattgacgcaaaaagagaaatcccctgatgtcatcgtcactgtcgataatggcatt
gccagtgtggatggcgtggcagcggccaatgcccagggcattgccgtggtagtcacggat
caccatttgccgggtgatcatttgccggatgctgctgtcatcgtcaatccaaatcagcct
gaatgcggctttcccagcaagaacctggccggtgtaggcgtcatgttttatgtcttgctg
gctttgcgggcagaactacgccagcgcggcgtgttcgaccagcaaaatcaacccaagctt
gatactttactggatctggttgcgctaggtacggttgctgacgtggttaaactggatgcc
aataaccgcatcctggtggcgcaaggcctgaagcgcatgcgcgctggccggatgtgtgcg
ggcatagctgcactattccgcgtagctggccgcgaaccacacaatgccagcccttttgat
cttggcttcgctcttggccccagactcaacgctgctggtcgtctggctgacatggccctg
ggcatagaatgcctgaccacggatgacgaaggccgcgcctggcaaatcgcgcaggaatta
aacagcatcaatgctgaccgcaaagacatagaacgtgaaatgcaggatgtggcgctgctt
cacctggatgatttccagccacaagatagcaataccattaccgtgtttgatgaaagctgg
catcagggtgtcattggtatcgtcgcctcgcgcctgaaagacaagttttatcgccccacg
attacctttgcacctggaggcgagggattgatcaaaggttcgggtcgttccataccaggc
tttcatttgcgtgatgcgcttgatctggtatccaagcacgcacccagcctgatacaaaaa
tttggtggtcatgcaatggcagcaggtctgaccttgcggtctgaagacttcccggcattc
cagcaggcttttgaagccgtaggaaaaagctggttacaggcacaccagcttgagcgggtg
gtagaaactgatggtccactggaagaggcctattacacgacagactttatccgcctgctg
gatacgcaagtatgggggcaaggtttccctccccccatattttgcgatgactttaaactg
atatcccagagaatattaaaagagcgccatttaaaactggtgctggagaaaaacaagctg
cgctatgatgcaatctggttcggccataccgacaccctgcctgaaaacgtccacgttgcc
ttcaggctcgatgccaatgaatacaatggtgtcaccagagtacagttaatggtggagcac
atagattaa
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