Undibacterium sp. YM2: UNDYM_3027
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Entry
UNDYM_3027 CDS
T10101
Symbol
xth-2
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
uny Undibacterium sp. YM2
Pathway
uny03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
uny00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
UNDYM_3027 (xth-2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
uny03400
]
UNDYM_3027 (xth-2)
Enzymes [BR:
uny01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
UNDYM_3027 (xth-2)
DNA repair and recombination proteins [BR:
uny03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
UNDYM_3027 (xth-2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-ProteinID:
BBB67280
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Position
3338387..3339151
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AA seq
254 aa
AA seq
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MKLVTWNVNSLKVRLPQVLQWLETNPVDVLCIQETKLTDDKFPQAEIEAAGYHVAFTGQK
TYNGVAILSKHAMTDIQKNNPQFEDEQQRIIAATIEGIRVICAYVPNGQAPDSDKFQYKL
KWFAALENWVREEMTRHPKLAVLGDYNIAPEDRDVHDPAAWVGMNLVSPEERAALTSLMS
LGLSDSFRQFEQAEKSFSWWDYRALGFRLNKGVRIDHILLSAELAKQCTSCVIDRVPRKW
EQPSDHAPVIATLA
NT seq
765 nt
NT seq
+upstream
nt +downstream
nt
atgaaattagtcacctggaacgtaaactccctgaaagtcagactgccacaagtcttgcaa
tggctggaaaccaatcctgtcgatgtgctgtgcatacaggaaaccaagctcaccgacgac
aagttccctcaggcagagatagaagcggcaggttatcacgtcgcttttactggtcagaaa
acctataacggtgtggcgattttatcgaaacacgctatgacggatatacaaaagaataat
ccgcagtttgaagatgaacagcaacgcatcattgccgccaccatagaaggcatacgcgtc
atctgtgcctatgtgccgaatggccaggcgccggattcagacaagttccagtacaaattg
aaatggtttgcggcattggaaaactgggtcagggaagaaatgacacgccatcccaaactg
gctgtattgggtgactacaacatcgccccggaagaccgggatgtgcatgatcctgccgcc
tgggtgggcatgaacctggtatcaccagaagaaagggcggcgctaacaagcctaatgagc
ctggggctgagtgacagcttccgccagtttgagcaggcagaaaaatcctttagctggtgg
gattatcgtgctctcggtttccgtctgaataaaggtgtacgcatagaccatatcctgctg
tccgcagaattggcgaagcagtgcacctcctgcgttatcgaccgcgtaccacgcaagtgg
gagcaaccatcggatcatgcgccggtgattgctaccctggcttga
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