Undibacterium sp. YM2: UNDYM_5857
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Entry
UNDYM_5857 CDS
T10101
Name
(GenBank) hypothetical protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
uny Undibacterium sp. YM2
Pathway
uny03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
uny00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UNDYM_5857
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
uny03019
]
UNDYM_5857
03009 Ribosome biogenesis [BR:
uny03009
]
UNDYM_5857
Enzymes [BR:
uny01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
UNDYM_5857
Messenger RNA biogenesis [BR:
uny03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
UNDYM_5857
Ribosome biogenesis [BR:
uny03009
]
Prokaryotic type
rRNA helicases
UNDYM_5857
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
DbpA
Helicase_C
ResIII
CMS1
HEM4
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
BBB70110
UniProt:
A0A809PUP7
LinkDB
All DBs
Position
complement(6425110..6427440)
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AA seq
776 aa
AA seq
DB search
MSENKPPITFEDLQLSAPIMRALQDVGYETPSPIQAATIPILLSNRDVLGQAQTGTGKTA
AFALPILSRLDVRQTTPQALVLAPTRELAIQVAEAFQTYARHIPGFHVLPIYGGQSYGPQ
LSALRRGVHVVVGTPGRVIDHLDKGTLDLSALKTLVLDEADEMLRMGFIDDVERILQETP
EGRQTALFSATMPSAIKRIAQTYLNKPAEVTVAAKTGTADNIRQRYWLVSGMHKLDALTR
ILEAETFDGMIIFARTKLGTEELAARLDARGFSVAAINGDINQQQRERTIQQLKDGKIDI
LVATDVAARGLDVERISHVINYDVPYDPESYTHRIGRTGRAGRSGEAILFITPREKNLLK
AIERATRQPVSPLELPTIQTVNNVRIARFKDQISATLAQGGLEEFTSLIEDFEREQNIPA
VEIAAALAKMARGDEPLLLDKNRKETKNDDSWRDERPARAERGDRNDRGDRGDRGDRFER
APREDRGARREHSPRTPEPGMQTFRIAVGHDHGVKPGNIVGAIANEANIESKFIGRIDIY
DDYTILDLPDNLPGDMMEHLSSVRVAGQALRISAEKGNGSNAPASRPAPRAAREETPRER
APRIAEAAPGSKLNQVVDRAARAPFEEERPAKPKKDKADGKGKVGIPMLTYRIEVGKADA
VTPSNIVGAIANEAGLEAKHIGRIDIFDDYSTLDLPDGMPKELLKQLKGVWVAGKQIQIS
PVGEDHVRKPLPTSQPSPFGPKKAGGDRRVTEKAKGYGAGKPKAAAAKPHRKGPKA
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaaacaaacccccgattacttttgaagacctgcaattgagtgcgcccatcatg
cgcgccttgcaggatgtaggctatgaaacaccgtcgccgatacaggcggccaccatcccg
attttgttgtccaaccgtgatgttctcggccaggcacaaaccggtaccggtaaaactgct
gcttttgccctgcccatactgtcacgcctggatgtgcgtcagaccacgccgcaggcgctg
gtgctggctccaacgcgtgagctggcaatacaggtggcagaagccttccagacttatgca
cgccatatccctggtttccatgtcttgcctatctacggcggccaaagctatggcccgcaa
ctctcggccctgcgccgcggtgtgcatgtcgtggtgggcacacctggccgtgtcatcgac
catctggacaagggcacgctggatttgtccgcgctgaaaaccctggtgctggatgaagcc
gatgaaatgctgcgcatgggctttatcgatgacgtagaacgcatcctgcaagaaacaccg
gaaggccgccagactgccttgttctcggccaccatgccgtcagccatcaagcgcatcgcc
cagacttatctgaacaaaccagcagaagtcaccgttgctgccaagaccggcacagccgac
aatatccgccagcgttactggctggtcagtggcatgcacaagcttgatgccctgacacgc
atactggaagccgaaactttcgacggcatgatcatttttgcccgtaccaaactgggtacc
gaagaactggcagccaggcttgatgcaagaggcttctcggttgccgccatcaacggcgac
atcaaccagcaacagcgtgaacgcactatccagcaactgaaagacggcaagatcgatatc
ctggtcgcgaccgatgtggctgcccgtggtctggacgtagagcgtatcagccacgtcatc
aactatgacgtgccgtatgatccagaaagctacacccaccgcattggccgtactggccgc
gccggtcgcagtggtgaagccatcctgttcatcacgccacgcgaaaagaatctcttgaaa
gcgatagaaagagcgacgcgtcagccagtgtcaccgctggaactgccgaccatacagaca
gtcaacaatgtccgtatcgcccgcttcaaggaccagatttcagccacgctggcacaaggt
ggtctggaagaatttacgtccctgatcgaagattttgagcgtgagcaaaatatccctgcg
gtggaaattgctgcggcgctggccaaaatggcgcgtggcgatgaacctttgctgctcgat
aaaaaccgtaaagaaacgaaaaacgacgatagctggcgcgatgagcgtcctgcccgcgcc
gagcgtggtgacaggaacgatcgcggtgacaggggtgaccggggtgatagattcgaacgc
gcaccgcgtgaagaccgtggcgcacgccgcgaacacagcccgcgcacaccagagcctggc
atgcagactttccgcatcgctgtcggtcatgatcatggcgtcaagccaggcaatatcgtt
ggtgcaattgccaatgaagccaatatcgaatccaagttcatcggccgtatcgatatctat
gatgactacaccatcctcgatctgccagacaatctgcctggcgacatgatggaacacctg
agttcagtacgtgtagctggccaggccctgcgcatcagtgcagaaaaaggcaatggcagc
aatgcgccagcatcccgtcctgcaccacgtgcagcgcgcgaagaaacacctcgtgaacgt
gctccacgtatagctgaagccgcacctggcagcaagctgaatcaggtcgtagatcgcgcc
gcccgcgcgccctttgaagaagagcgcccggccaaacctaaaaaagacaaggctgacggc
aaaggcaaggtcggcatccccatgctgacttaccgtatcgaagtcggcaaggctgatgca
gtaacgcctagcaatatcgttggtgcaatcgccaatgaagccggtctcgaagccaagcat
ataggccgtatcgatatttttgacgactacagcacgctggacttgccagatggcatgccc
aaggaattgctgaagcagttgaaaggtgtctgggtcgcaggcaagcaaatccagatcagc
ccggtcggtgaagaccatgtgcgcaaacctctgccaacaagccagccttcacctttcggc
cccaagaaagcaggcggtgatcgccgcgtgacagaaaaagccaagggatatggagcaggc
aaaccaaaagctgctgcagccaagccgcatcgcaaaggccctaaagcctga
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