Undibacterium piscinae: EJG51_000570
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Entry
EJG51_000570 CDS
T06644
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
upi
Undibacterium piscinae
Brite
KEGG Orthology (KO) [BR:
upi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
upi03019
]
EJG51_000570 (hrpA)
Enzymes [BR:
upi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EJG51_000570 (hrpA)
Messenger RNA biogenesis [BR:
upi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
EJG51_000570 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
SRP54
T2SSE
NACHT
AAA_30
ResIII
SLFN-g3_helicase
AAA_23
Motif
Other DBs
NCBI-ProteinID:
QJQ04589
UniProt:
A0A6M4A3D1
LinkDB
All DBs
Position
108027..112082
Genome browser
AA seq
1351 aa
AA seq
DB search
MSDLRQLRDQLRDKSAPVKEHAGLPQKAKSHPVLASAGSELDGTPLKTQGTKARGQQSVP
PKGAREAVATPETLPFRNPPPVISYPEELPVSGRRAEIAEALCKHQVIIVCGETGSGKTT
QLPKICLELGRGQKGMIGHTQPRRIAASSTAKRIAQELNSPLGEHVGFKVRFNDTLTKGA
SVKLMTDGILLAETQTDPLLRQYDTIIIDEAHERSLNIDFLLGYLKQILPKRRDLKLIIT
SATIDAQRFANHFADHSGPEPKPAPVIEVSGRLYPVEVRYRPVQNDEKDKERDLMTAITD
AVDELCRVGSGDVLVFLPGEREIRDTAEALRKHHPAHVEILPLFARLSAQEQERVFKVSN
ARRIVLATNVAETSLTVPGIRYVVDAGLARVKRYSYRNKVEQLQVEAVAQSAANQRAGRC
GRVAAGVCIRLYEEQDYLNRPKFTEPEIMRSSLAAVILRMKSLHLTDVESFPFIEPPPGR
AIADGYQLLQELGAMDEGNHLTAVGKQLAKLPLDPRVGRMILAARDNQALSEVLIIAAAL
SVQDPRDRPMEAQAAADAAHKKFADEKSEFQSYLKIWKWFEEAIEHKKTNRQLQDNCRAN
FLSQMRLREWREVHSQLLTIVKEQGWRLNESPATYEQLHLALLTGLLGNIGYKSDEEAHY
LGARGIKFFIWPGSSLAKKAGRWVMAAELVDTTRLYGRCIAQIQPEWLEKIGGHLLKKSY
GEPRWEKRAGQVSAFERATLYGLVVYSQRRIQYGLTHPAEARDIFIRDALVEGELDTRLP
FFAHNQKLVREIENLEHKSRRIDVLVDDELIVAFYDKLIPPGVYNAVLLEQWYKESVREN
PKLLYLNKDELMRHEAAGVTTELFPKTMQVSGVALQLSYHFEPGSPRDGVTLSVPLFSLN
QLSADRCEWLVPGMLKEKVHLLIKSLPQKIRRHCVPLPNYAAGFCERKEFGSGNFLDAVI
ADIREQTGLICMSTDFKFETVPVHLTMNFKIVDEHGRQLEMGRNLATLRAEFGGQARESF
QRIASAEKLSLLDSGKSGAATAAAKQGATPVSAHAPAANVAAKPGFQLQQDNLTGWTFDS
LPELLEVQQGKQTLIGYPALVDKITHCHIEVFDDPDEAARIHRIGLRRLFALQIKEQVKF
LEKNIPGLQQMGMQFMALGSQEELREQIVQVALESAFLQQPLPTNSGEFNQRRDAGKARL
NLLANEVARLAAQILGEYHGLPKKLQALKAHPQAAADMQSQLQMLISKRFIADNDFSQLS
HFPRYLKAVTVRMDKLRADPARDAKLMLEWNSVAQPWQRTPRKTGPDADPKLQEFRWLLE
ELRVSLYAQELRTPMPVSAKRLQKVWESMQR
NT seq
4056 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacttacgtcagttgcgtgatcaattaagagataagagcgctcccgtcaaggag
catgcgggcttgccgcaaaaagccaaatctcatccggtcttagcatctgctggcagtgag
cttgatggcactccgttgaagacccagggcacgaaggcgcgcgggcagcaatcggtgccg
ccaaaaggcgcacgcgaagcggtggcgacacccgagacactgccgtttcgcaatccgcca
cctgtcattagctatccggaggagttgccggtttctggccgtcgcgcggaaatcgccgag
gctttatgcaagcatcaggtcatcatcgtatgcggtgagaccggctcggggaagactacc
caattgcctaagatttgcctggaactgggtcgcggtcaaaaaggtatgataggccatacc
cagccgcgccgtatcgctgcctcttctaccgccaagcgcatcgcgcaagaacttaattcg
ccgctgggcgagcatgtcggctttaaggtgcgctttaatgacaccttgaccaagggcgca
tcggtcaagctgatgaccgatggtatcttgctggcggaaacccagaccgatcctttgctc
aggcaatacgacaccatcattatcgatgaggcgcatgagcgcagcctgaatatcgatttc
ctgcttggttacctcaagcagattttgcccaagcgccgtgatttaaagctgatcatcaca
tcggccacgatcgatgcccagcgttttgccaatcactttgcagatcatagcggacccgag
cccaaacctgcaccggtcattgaagtctccggccgcctgtatccggtcgaagtgcgctac
cgcccggtgcaaaatgacgagaaagataaagaacgtgatctgatgaccgccatcaccgat
gcggttgatgagctatgccgtgtcggttccggtgacgtgctggtgtttttgccgggtgag
cgcgaaattcgcgacaccgccgaagccttgcgtaagcatcatccggcccacgtagagatt
ttgccgctgtttgcgcgcttgtcggcgcaagagcaggaacgtgtcttcaaggtctccaat
gcgcgtcgcattgtcttggctaccaacgtcgcggaaacctcgctgacggtacctggtatc
cgctatgtggtcgatgccgggttggcgcgcgtcaagcgttacagctaccgcaataaggtc
gagcaattgcaggtggaagcggtggcgcagtctgccgccaatcaaagggccggtcgttgc
ggtcgtgttgctgccggtgtttgcatacgcctttacgaagaacaggattacctgaaccgg
ccgaaatttaccgagccggaaatcatgcgctcgtcgttggctgcggttatcttgcgcatg
aagtcgctgcatctgacagatgtagagagttttcctttcatcgagccgccaccagggcgg
gcgattgccgatggctatcaattgctgcaagagttgggggcgatggacgagggcaatcat
cttaccgcggtcggtaagcagctcgccaaattgcctttggacccgcgggttggccgcatg
atactggcggcgcgtgataatcaggcgcttagcgaagtcttgattatcgctgccgccttg
tcggtgcaggacccacgtgatcgccctatggaggcgcaggctgcggctgatgccgcgcat
aagaaatttgccgatgaaaaatctgagtttcagtcttatctgaaaatctggaagtggttt
gaagaggcgatagagcataagaaaaccaaccggcaattgcaggataactgccgtgccaat
tttctcagtcagatgcgtctgcgtgaatggcgtgaggtacatagccagttgctgaccatc
gttaaggagcagggttggcgtctcaatgaaagcccggcgacctatgaacaattgcatctg
gctttactcaccggcttactcggcaatatcggttataaatccgatgaagaggcgcattac
ctgggcgctcgcgggatcaaatttttcatctggcccggttccagtctggcgaaaaaagcc
ggacgctgggtgatggcggcagaactggttgataccacgcgcctgtacggccgttgtatt
gcgcagatacagccggaatggctggaaaaaatcggcggccatctgctcaagaagtcgtat
ggcgaaccgcgctgggaaaaacgcgctggtcaggtttcggccttcgaacgcgccaccctg
tatggtttggtggtgtatagccagcgccgcatccagtatggtttgacgcatccggctgag
gcacgcgatatctttattcgcgatgccttggttgagggcgaactcgacacccgcttgccg
ttctttgcgcataaccagaaactggtgcgcgagattgaaaatctggagcacaagtcgcgc
cgcattgacgtactggtggatgatgagttgatcgtcgcattctatgacaagttgataccg
cctggcgtgtataacgccgtcttgctggagcaatggtataaggagtcggtcagggaaaac
cctaagctgctgtatctgaataaagatgaactgatgcggcacgaagcggctggcgtcacc
accgaactttttccaaaaaccatgcaagtgtccggtgttgcgttgcagctgagttaccac
ttcgagcctggcagcccgcgtgatggcgtgactttgagtgtgccgctgttttcgctcaat
cagttgtccgccgacaggtgtgagtggctggttcctggcatgctcaaggagaaagtgcat
ttgctgattaaatccttgccgcaaaagatacgccgccattgtgttcctttaccgaattat
gcggccgggttttgcgagcgtaaggagtttggtagcggtaattttctcgatgccgtgatc
gccgatatccgcgagcagactggcctgatttgcatgagcactgattttaaattcgagact
gtgcccgtccatctgaccatgaatttcaagatcgttgatgaacatgggcggcagctggaa
atgggtcgcaatctcgctactttacgggctgagtttggcgggcaggcacgcgagagtttt
caacgtatcgctagtgcagaaaaactgagcttgctcgattccggcaagagtggcgctgct
acagcagcggctaagcagggcgcgactcctgtgtcggcgcatgcgccagcggccaatgtc
gcggccaagcctggctttcagttgcagcaggataatctgaccggctggacttttgatagc
ctgccagaattactcgaagtgcagcaaggtaagcaaaccttgatcggttatccggccttg
gtcgataaaatcacgcattgccatatcgaagtgtttgatgatcccgatgaggcggcgcgt
atccatcgcataggcttacgccgtttgtttgccttgcagatcaaagagcaggttaaattt
ttagagaaaaatattccgggtctgcagcagatggggatgcaatttatggcgttgggttcg
caggaagagttgcgcgagcagatcgtccaggtcgcgctggaaagtgcctttttgcagcaa
cctttgccgaccaattccggtgaatttaatcagcgccgtgatgccggtaaggcacgactg
aatctgctggccaatgaagttgcgcgcttggcggcacagattctgggcgaatatcatggt
ttgccgaaaaaactgcaggcgctcaaggcgcatccgcaagccgctgccgatatgcaaagc
caattgcagatgctgatcagcaagcgctttattgccgacaatgatttcagtcagttatcg
catttcccgcgctatctgaaggccgtgacggtgaggatggataagttgcgggctgacccg
gcgcgcgatgccaagctgatgctggaatggaattcagtcgcccagccatggcagcgtacg
ccacgcaagaccgggcccgatgctgatccgaagttgcaagagtttcgctggttactcgaa
gagttgcgcgtatcgctctacgcacaagagttgcgcacgcctatgccggtttctgccaaa
cgcttgcaaaaggtatgggaaagcatgcaaagatag
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