Undibacterium piscinae: EJG51_004745
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Entry
EJG51_004745 CDS
T06644
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
upi
Undibacterium piscinae
Pathway
upi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
upi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EJG51_004745 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
upi03019
]
EJG51_004745 (rnr)
03016 Transfer RNA biogenesis [BR:
upi03016
]
EJG51_004745 (rnr)
Enzymes [BR:
upi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
EJG51_004745 (rnr)
Messenger RNA biogenesis [BR:
upi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EJG51_004745 (rnr)
Transfer RNA biogenesis [BR:
upi03016
]
Prokaryotic type
tRNA degradation factors
EJG51_004745 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_RNR_1st
RNase_II_C_S1
Rrp44_S1
SAM_HAT_N
CSD
Motif
Other DBs
NCBI-ProteinID:
QJQ05267
UniProt:
A0A6M4A3X0
LinkDB
All DBs
Position
complement(1025587..1028058)
Genome browser
AA seq
823 aa
AA seq
DB search
MNKHSYPIPSREEILGILRTSKSQQNVETIAAALGVKPDELDGMVRRLNAMERDGQLKQD
KSGVYALANQSNFISGRVNSHRDGYGFLTPDDGSEDLYLPEREMQRVLHGDRVSARVVGT
DRRGRLEGGIVEILERANTHVIGRLLNENGAWIVAPEDNRFSQDIILAGSPGKAKSGQIV
SVALIEQPTKYSQAVGKIVEILGDVDDPGMEIEIAVRKFGVPHEFSEPAKKAAAKLPGEV
KPADLHDRVDLRDIPLVTIDGEDARDFDDAVYCEPVKIGRSKGHRLIVAIADVSHYVKPN
DALDADALLRSTSVYFPRRVIPMLPEKLSNGLCSLNPDVDRLTLVCDMVITQDGEVTAYQ
FYPAVIHSAARFTYTEVAAILGNTKGPEAAKRATLVPHLQHLYECFQALLKARHLRGAID
FETTETYIVCNAAGKIEKILPRTRNDAHKLIEECMLAANVCAADLLKEYKHPGTYRIHAS
PTKEKLTQVRNFLKQVGLNLSGGDKPSASDYAELMLKVKGRPDAPLLQTMLLRSMQQAVY
SPDNIGHFGLSYEAYAHFTSPIRRYPDLLTHRAIKAILLGKKYEPKGIDTSLLNTAISNS
ARKQQVLDKAAGKKKLEKDLTIWDALGTHCSANERRADEASRDVEAWLKCYFIKNKLGEE
FSGTISAVTQFGIFVQLDDIYIEGLVHITELGADYFQFDDARHELRGERTGKRYQLTDRV
KVQVSRVDLDARKIDLAMVQDSSAKGAKVLDRERIADNDRAKSAKTSHGKTAGKSAKATT
KSTSDRTARVAPASVKAGRGKAESSVVRPERTSRNARATKKKR
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
ttgaataaacattcctacccaatccctagccgtgaggaaattctcggcatcctgcgtact
tctaagagtcaacagaatgtggagacgattgctgccgcattgggcgtaaaaccagacgaa
cttgatggtatggtaaggcgccttaacgcgatggagcgagatggtcagctaaagcaagat
aagtctggtgtttacgcgctggcgaatcagagtaattttatttcgggacgtgttaatagt
catcgtgatggttatggcttcctgacgcctgatgacggtagtgaagatttgtatttgcct
gagcgcgaaatgcaaagggtgttgcatggagatcgggtctcagcacgggtggtgggtacg
gatcgtcgcggacggctggaaggcgggatagttgagattctcgagcgtgccaatacccat
gtaattggacgcctgctcaatgaaaacggtgcttggatagttgcgcctgaagataatcga
tttagccaggacattattctggcaggttctcctggtaaagcgaaatcgggtcagattgta
agcgtcgccctgattgaacagcccactaagtattcgcaggcagtcggaaaaattgttgaa
attctcggtgatgttgatgatcctggaatggagatcgaaatcgcagtgagaaaattcggc
gtgcctcatgaattttccgagccagccaagaaggctgcagctaaattgcctggcgaagta
aagcctgcggatctccatgatagagtcgatctgcgcgatattcctttagtgaccatagat
ggtgaagatgcacgtgattttgatgatgccgtctattgtgagccagtaaaaatcggacgc
agtaaagggcataggctgattgtggcgatcgcagacgtcagccattacgtcaaaccgaat
gatgccttggatgcggacgccttattgcgtagcacctcggtctattttccgcgccgggtt
atccctatgctgccggaaaaattatcgaacggcttgtgttcgcttaatcccgatgtcgat
cgtctgacattggtatgtgatatggtaattacgcaagatggcgaagttactgcgtatcag
ttttatccggcggtgattcattcggccgcaagatttacttatactgaggtggctgcgatc
ctgggcaacaccaaaggacctgaggccgctaaacgcgcgactttagtccctcatctccag
catttgtatgagtgcttccaggcgcttctgaaagcgcgccacttacgtggtgcgattgat
tttgaaaccactgaaacctacatcgtttgcaatgccgcagggaaaattgaaaagattttg
ccgcgtacgcgtaatgatgcgcacaagttaattgaagaatgcatgctggcggccaatgtc
tgcgccgctgatttgctgaaggaatacaagcaccctggcacgtatcgtatccatgccagc
ccaacgaaggaaaaactgactcaggtgagaaatttcctgaaacaggttgggttgaatctg
agtggtggcgacaagccttccgcatccgattatgcagagctgatgcttaaggtgaagggg
cgacctgatgccccgttactgcaaactatgctgttaagatctatgcagcaagcggtgtac
agcccggataatattggccattttggcttgtcgtatgaagcctatgcgcacttcacaagt
ccgatccggcgctatcctgatttactgacgcatcgtgcgatcaaggctatccttctgggt
aaaaagtatgagcctaaaggcatcgatacgagcttgctcaatactgctatctctaattcg
gcgcgtaaacagcaggtactggataaggctgcaggtaagaaaaaattagaaaaagattta
acgatttgggatgcactgggtacgcattgttcggcgaatgagcgacgtgctgacgaagct
tcgcgggatgttgaagcatggctgaagtgctatttcattaagaataaattaggcgaagag
ttttccggcacaatttccgcagtaactcaattcggtatatttgttcagcttgatgatatc
tatattgagggcttggtgcacatcacggaactcggtgccgattactttcagttcgatgac
gcaaggcatgaattacgcggcgagcgtacgggtaagcggtatcagttgactgatagggtt
aaggtgcaggtcagtcgggttgatcttgatgcgcggaagattgatttggcgatggttcag
gactcatcagccaaaggtgcgaaagtcttggatcgcgagcggattgctgataatgaccgg
gcgaaaagcgcgaaaacatcacacggaaaaactgcgggaaaatcggctaaggcgacaact
aaatcaacctcggatcgaaccgccagggtagcgcccgcctcagtcaaagcgggtcgtggc
aaagcggagagttcggttgtgcgtccggagcggacatcaagaaatgccagggcaacaaag
aaaaagcgctaa
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