Neoundibacterium piscinae: EJG51_011010
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Entry
EJG51_011010 CDS
T06644
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
upi
Neoundibacterium piscinae
Pathway
upi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
upi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EJG51_011010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
upi03019
]
EJG51_011010
03009 Ribosome biogenesis [BR:
upi03009
]
EJG51_011010
Enzymes [BR:
upi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EJG51_011010
Messenger RNA biogenesis [BR:
upi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EJG51_011010
Ribosome biogenesis [BR:
upi03009
]
Prokaryotic type
rRNA helicases
EJG51_011010
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
DbpA
Helicase_C
DeaD_dimer
ResIII
CMS1
HEM4
UvrA_inter
YmjE
Motif
Other DBs
NCBI-ProteinID:
QJQ06293
UniProt:
A0A6M4A583
LinkDB
All DBs
Position
complement(2459450..2461771)
Genome browser
AA seq
773 aa
AA seq
DB search
MSETNPLFTDLNLSEPLIRALKDVGYESPSPIQAATIPVLLENRDVLGQAQTGTGKTAAF
ALPILSRIDIRQTAPQALVLAPTRELAIQVAEAFQTYAKHIPGFHVLPIYGGQSYGPQLS
ALRRGVHVVVGTPGRVIDHLDKGSLDLSKLKTLVLDEADEMLRMGFIDDVERILKDTPET
RQVALFSATMPSAIKRIAQTYLNKPAEITVAAKTGTADNIRQRYWLVSGMHKLDALTRIL
EAETFDGMIIFARTKLGTEELAGKLSARGFSVAAINGDIQQQQRERTIQQLKDGKIDILV
ATDVAARGLDVERISHVVNYDVPHDPESYTHRIGRTGRAGRSGEAILFITPREKNLLKAI
ERATRQPISPLELPTIQAVNDVRIARFKDQITETLAQGELEQFLAIIEDYEREKNVPAFE
IAAALAKMARGSEPLLLDKNKREVKSDDSWRDEQPARNTRTERGDRPARGERSDRFDRGD
RPEREERGQRREHSPRTAEPGMRTFRIAVGHEHGVKPGNIVGAIANEANIDSKFIGRIDI
YDDYTVLDLPDSLPQDMMEHLKSVRVAGQALNIRADGASGSAPAAASFSKAPAAPASKLS
KVVERATRFPGEEEAPAKSEKKRLENKGKVQIPMLSYRIEVGREHAVTPSNIVGAIANEA
GLEAKHIGKIAIFDDYTTLELPDGMPPEVLTHLKGVWVANRQLKISPVAPGSINTDKPAK
FSAAPSAFGERKAGGDRRVQEKSAPHAKKDSVKRPFKADGAGSKPPRKTFKPG
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaaccaatcccttatttaccgatcttaatctcagcgagccgctaatccgcgcc
ctgaaagatgtcggttacgaatccccttcgcctatccaggcggccactattccagttttg
ctggaaaaccgtgacgtgctcggtcaggcgcaaaccggtaccggtaaaaccgctgcgttt
gccctgccgattttgtcgcgtatcgatatccgccaaactgcaccgcaagccttggtgctg
gcgcctacgcgcgaactggcaatccaggtcgcagaagctttccagacttatgccaagcat
attcctggtttccacgtcttgccgatttacggcggccagagctacggcccgcaattgtcg
gccttgcgccgtggcgtgcatgtggtagtcggtacgccaggtcgcgtgattgaccatctg
gacaaaggttcgctcgatttgtccaagctgaaaacgctggtactggacgaagccgatgaa
atgctgcgcatgggttttatcgatgacgtagaacgcatcctgaaagacacgccggaaacc
cgtcaggttgccttgttctcggccaccatgccgtccgccatcaagcgcattgcccagact
tacctgaacaagccggccgagattaccgttgccgccaaaaccggtactgccgacaatatc
cgccagcgttactggttggtgtccggcatgcacaagcttgatgccctgacacgtattctg
gaagccgaaacttttgacggcatgatcatttttgcccgtaccaagttgggtaccgaagag
ctggccggcaaactgtcggcaagaggcttctcggtagcggcgattaacggcgacatccag
cagcagcagcgcgagcgcaccattcagcaactgaaagacggcaagatcgatatcctggtc
gctaccgatgtggccgcccgtggtctggatgtggaacgcatcagccatgtggtcaactac
gatgtgccgcatgatccggaaagctatacccatcgtatcggccgtaccggccgtgccggc
cgtagcggcgaagcgattttgtttatcaccccgcgcgaaaaaaatctgctgaaagccatt
gaacgcgctacccgtcagccaatttccccattggaattgccgaccatacaagccgtcaat
gacgtgcgtatcgcgcgctttaaggatcagattaccgagactctggcgcaaggcgaactc
gaacagttcctggcgatcatagaagattatgagcgcgaaaaaaatgtgccggcttttgaa
atcgctgccgcattggcgaaaatggcgcgtggctctgagcctttgctgctcgacaaaaac
aagcgtgaagtgaagagcgacgatagctggcgcgatgagcaaccggcacgcaatacccgc
accgagcgcggcgaccgccctgcccgtggcgagcgcagcgacaggtttgatcgtggtgac
cgtcctgagcgcgaagagcgcggtcagcgtcgtgagcatagcccgcgtaccgctgagcct
ggcatgcgcactttccgcatcgccgtagggcatgagcatggcgtcaaacctggcaatatc
gtcggcgcaatcgccaacgaagccaatatcgactcgaagtttatcggtcgcatcgatatc
tacgacgactacacggtactcgatttgccagacagtctgccgcaagacatgatggagcac
ctgaaatcggtacgcgttgccggtcaggctctgaatatccgtgccgatggcgcgagtggt
tccgcaccggcggccgcgagtttcagcaaagcgcctgcggcaccggcgagcaagctgagc
aaggtagtggagcgtgctacgcgtttcccgggcgaagaagaagcgccggccaagtctgag
aaaaaacgtttggaaaataaaggcaaagtacagatccctatgctcagttatcgcatagaa
gtcggccgcgaacacgccgttacaccgagcaatatcgttggtgcgattgctaacgaagcc
ggtctggaagccaagcatatcggtaagatcgctatttttgatgactacacgacgctggaa
ctgcctgatggcatgccgccggaagtgctgacacacctgaaaggcgtgtgggttgcgaat
cgtcagttgaagatcagcccggtagcgccaggcagtatcaataccgataagcctgccaag
ttctccgctgcaccttccgcctttggcgaaagaaaagcgggcggtgatcgtcgtgtgcag
gaaaaatcggcaccgcacgccaagaaagacagcgtaaaacgtccgttcaaggccgatggc
gctggcagcaagccaccgcgcaagacctttaagccaggttaa
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