Usitatibacter palustris: DSM104440_00004
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Entry
DSM104440_00004 CDS
T06995
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
upl
Usitatibacter palustris
Brite
KEGG Orthology (KO) [BR:
upl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
upl03032
]
DSM104440_00004 (topA)
03400 DNA repair and recombination proteins [BR:
upl03400
]
DSM104440_00004 (topA)
Enzymes [BR:
upl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
DSM104440_00004 (topA)
DNA replication proteins [BR:
upl03032
]
Prokaryotic type
DNA Topoisomerases
DSM104440_00004 (topA)
DNA repair and recombination proteins [BR:
upl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
DSM104440_00004 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
zf-C4_Topoisom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
QJR13222
UniProt:
A0A6M4H1K6
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Position
complement(5116..7689)
Genome browser
AA seq
857 aa
AA seq
DB search
MTTHLLIVESPSKAKTLKKYLGKDYEVLASYGHVRDLVPKTGAVDPDDNFRMQYELIDRN
TKHVDNITRAVKDADVILLATDPDREGEAIAWHLSEILKSRKALKDKKIKRVVFYEITEG
AVTDAVKNPRAISMDLVNAQQARRALDYLVGFNLSPLLWKKIRRGLSAGRVQSPALRLIC
ERENEIEAFKSQEYWTLHFDGDKDKVTFTARLTHFEGEKLDQFAVPSAERNGEIIAFLQS
HAKGVAKVREIEKKRRLKSPAAPFTTSTLQQEAVRKLGFSTDRAMKVAQSLYEGVNIGRT
VTGLITYMRTDSVTLSKEAMTEIRGFITKNYGADHLPKAPVFYANKTKNAQEAHEAIRPT
SVTRTPDSVSQYLNDEQRKLYEMIWKRTVSSQMMPAQFDTVAVDFNVGGDGNVFRATGQT
MIFPGFYAVYHEDQDDSPSDDEEKRLPAFKQGDVVDITKLYGEQHFTQPPPRFSEASLVK
ALEQYGIGRPSTYASIISTLQKREYVILDKKRFTPTDVGRVVNKFLSEHFAHWVDYEFTA
KMEDELDDISNGKEEWIPVLEKFWKDFSAQIGEKESVSRKDVTQEQLDEVCPKCGKHKLT
IRLGRRGRFIGCPGYPECDYTRNVDGSDGGPANEKREIGVDPVTGKLIQLLFGPFGPYLQ
LGEMEGDKKPKRVSVPKNILPDQVNFEIAEMLLALPRDLGAHPEDKKKVIANIGRFGPYV
SHDGQFKSIPKAESVFDITLERAVALLKEPKAAGGRGALKVLGKHPEDGQAVSLYAGKYG
PYVKHGKVNATLPDEKMITTVTLEEAIELLAAKAGKGKKKPAKTKAAPKAAAPPKLKAAA
KAKPKAKAKASKAKKAA
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgcatctactcatcgtcgaatcgccgtcgaaggcgaagacgctcaagaaatac
ctcggcaaggactacgaagtcctcgcctcgtacggtcacgtccgtgatctcgtgcccaag
accggcgctgtcgatcccgacgacaacttccgcatgcagtacgagttgatcgaccgaaac
acgaagcacgtcgacaacatcacgagggccgtgaaggatgccgatgtcatcctgctcgca
accgacccggatcgcgaaggcgaggcgatcgcatggcatttgtcggagatcctcaaatcg
cgaaaggcgctgaaggacaagaagatcaagcgcgtcgtgttctacgagatcaccgagggc
gccgtcaccgatgcggtgaagaacccgcgcgcgatatcgatggacctggtgaacgcccag
caggcgcgccgcgcgctcgactacctggtcggcttcaacctgtctccgctgctctggaaa
aagatccggcgcggcctgtccgccggccgcgtgcaaagcccggccttgcgcctgatctgc
gagcgcgagaacgagatcgaggcgttcaagagccaggaatactggacgctgcacttcgat
ggggacaaggacaaggtcactttcaccgcccggctcacgcacttcgagggcgagaagctc
gaccagttcgccgttccgagcgccgagcgcaacggcgagatcatcgccttcctgcagtct
cacgcaaagggtgtcgcgaaggtccgcgagatcgagaagaagcgccggctcaagtcgccc
gccgcgcctttcacgacctccacgttgcagcaggaagccgtgcgcaagctgggcttctcg
accgatcgcgcgatgaaggtcgcgcagagcctctacgagggcgtcaatatcgggcgcacg
gtcacgggcctcattacctacatgcgtacggactcggtcacgctctccaaggaagcgatg
acggaaatccgtggattcatcaccaagaactacggcgcggatcaccttccgaaggcgccg
gtgttctacgcgaacaagacgaagaatgcacaggaagcgcacgaagccatccgcccgacg
tcggtaacccgcacgcctgactccgtctcgcagtacctcaacgacgagcagcgcaagctc
tatgaaatgatctggaagcgcaccgtgtcgtcgcagatgatgcccgcacagttcgatacc
gtcgcggtcgatttcaacgtcggcggcgacgggaacgtattccgcgcgaccggccagacg
atgatcttcccgggcttctacgcggtgtatcacgaagaccaggatgattcgccctcggac
gacgaggaaaagcgcctgcccgcgttcaagcagggcgacgtcgtggacatcaccaagctc
tacggcgaacagcatttcacgcaacccccgccgcgcttttcggaagcgagcctggtgaaa
gcgctcgagcagtacggcattggccggccctcgacctacgcgtcgattatctcgacgctg
cagaagcgcgagtacgtgatccttgacaagaagcgcttcacgcccaccgacgtgggccgt
gtcgtgaacaagttcctgtcggagcatttcgcgcactgggtcgactacgagttcacggcg
aagatggaagacgagctcgacgacatctcgaacggcaaggaagagtggattccggtcctc
gagaagttctggaaggatttctctgcgcagatcggcgagaaggaatccgtttcgcgcaag
gacgtgacccaggagcagttggacgaggtctgccccaagtgtggcaagcacaagctcacc
atccgactcgggcgccgcggccgcttcatcggttgccccggctatcccgagtgcgattac
acgcgcaacgtcgatggctccgacggcggcccggcgaacgagaagcgcgagatcggcgtc
gatccggtcaccggcaagctgatccagctcctctttgggcctttcggcccttacctgcag
ctgggcgagatggagggcgacaagaagcccaaacgcgtctcggtgcccaagaacatcctg
cccgaccaggtgaacttcgagatcgcggagatgctcctcgcattgccgcgcgaccttggc
gctcacccggaggacaagaagaaggtcatcgccaacatcggtcgatttggcccgtatgtc
agccacgatggccagttcaagtcgatcccgaaggccgaaagcgtcttcgacatcacgctc
gagcgcgctgtcgcgttgttgaaggaaccgaaggccgctggcggacgcggcgcgctgaag
gttctcggcaagcatcccgaggacggccaggccgtatcgctttacgcgggcaagtacggc
ccgtacgtgaagcacggcaaggtgaacgccacgctccctgacgagaagatgatcacgacc
gtcacgctcgaggaagcgatcgagcttcttgcggccaaggcgggcaagggcaagaagaag
cccgccaagaccaaggccgcgccgaaggccgcggcgcctccgaagctgaaggcggcggca
aaggcgaagccaaaagcgaaggcgaaagcctccaaggcaaaaaaggccgcgtaa
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