Usitatibacter palustris: DSM104440_00176
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Entry
DSM104440_00176 CDS
T06995
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
upl
Usitatibacter palustris
Pathway
upl03030
DNA replication
upl03410
Base excision repair
upl03420
Nucleotide excision repair
upl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
upl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DSM104440_00176 (polA)
03410 Base excision repair
DSM104440_00176 (polA)
03420 Nucleotide excision repair
DSM104440_00176 (polA)
03440 Homologous recombination
DSM104440_00176 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
upl03032
]
DSM104440_00176 (polA)
03400 DNA repair and recombination proteins [BR:
upl03400
]
DSM104440_00176 (polA)
Enzymes [BR:
upl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
DSM104440_00176 (polA)
DNA replication proteins [BR:
upl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DSM104440_00176 (polA)
DNA repair and recombination proteins [BR:
upl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
DSM104440_00176 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DSM104440_00176 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
HHH_2
Motif
Other DBs
NCBI-ProteinID:
QJR13393
UniProt:
A0A6M4H3W0
LinkDB
All DBs
Position
190622..193411
Genome browser
AA seq
929 aa
AA seq
DB search
MTETTKRILLVDAFSYLYRAFHAIREMRSPAGEPTNAIYGVLSMLKKLRQDYPSDYIACV
FDPKGKTFRDEIYPEYKATRSAMPEDLASQIDPLVEAIEATGWPIVVVDGVEADDVIGTL
AYNASQAGCRTVISTGDKDLTQLVSDKVLWVNTMSNERLGPEGVKEKFGVPPERIVDYLT
LVGDSVDNVPGVDKVGPKTAAKLLQDYGSLDALVAKADEVKGVVGENLRKALDWLPTARV
LVTVKHDVPLPFNVDSLTFRGPNKEKLLALYDRFGFRTMRDALLKDDAPSPLGEGRVEGS
APPSRAVNSAQPASVPTPPPTPTASFVATRNYETVLTPEALDKWVAKVEGAPLVCFDTET
TSLDPMTAELVGLALSVEPGEAAYIPLRHTYPGAPDQLPFAATLARFKPWLEDASRAKVA
QNAKYDCHVLANEGVRVRGIAHDTCIASYVIDSYQRHDMDALAMRHLGAKTIPFEDVAGK
GAKQISFAQVALDKATEYSAEDADVTLQLQGVLGPKVAADPKLDRVYSEIEMPVSRVLFA
MERNGVLIDSQLLAKQTHELSEKMLALEHRAYEEAGQPFNLGSPKQLGEILFVQKQLPVK
KKTPSGAPSTDEDVLEQLALDHPLPKILLEHRGLSKLKSTYTDKLPRMVNAKTGRVHTNY
GQTVAVTGRLSSTDPNLQNIPVRTAEGRRIREAFIAPPGSKIVSADYSQIELRIMAHLSG
DKSLIDAFGRGEDIHRHTAAEVFGAATADVTSEQRRYAKVINFGLIYGMSAFGLAGNLGI
ERSAAASYMDKYFARYPGVAQYMERTRAEAKEKGYVETVFGRRLWLPDIKSANAPRRQGA
ERQAINAPMQGTAADLIKLAMIAVQGWLEREKLATRLVMQVHDELVLEVPDTELSRVKSE
VEKLMMGVAKLDVPLVVEAGVGENWEKAH
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atgacggaaacaacgaagcgcatcctgctggtcgacgccttcagctatctctatcgcgca
ttccacgcgatccgggagatgcgaagccccgcgggcgagcccacgaatgcgatctacggc
gtgctgagcatgctgaagaagctcaggcaggattacccctcggattatatcgcctgcgtc
ttcgatcccaagggcaagaccttccgcgacgagatctatcccgagtacaaggccacgcgc
tcggcgatgcccgaggacctcgcctcgcagatcgacccgctggtcgaggcgatcgaggcc
accggctggcccatcgtcgtggtcgacggcgtggaagccgacgacgtgatcggcaccctc
gcgtacaacgcctcgcaggcgggttgccgcacggtgatctccaccggcgacaaggacctc
acgcagctcgtgagcgacaaggtgctgtgggtgaacaccatgtccaacgagcgcctcggg
cccgagggcgtgaaggaaaaattcggcgtgccgcccgagcgcatcgtcgattacctcacg
ctcgtgggcgattctgtcgacaacgtgcccggcgtcgacaaggtcggcccgaaaacggca
gcgaagctcctgcaggactacggttcgctcgatgcactcgtcgcgaaggccgatgaggtg
aagggtgtcgtcggcgagaacctccggaaggcgctcgactggctgcccaccgcgcgcgtg
ctcgtcaccgtgaagcacgacgtgccgctgccgttcaacgtggattcgctcaccttccgc
ggccccaacaaggaaaagctccttgcgctctacgatcgcttcggctttcgcacgatgcgc
gacgcgctgctcaaggacgatgctccctctcccttgggagagggccgggtagagggtagc
gcgccgccgtcccgagccgtcaacagcgcgcagccggcgagcgtacccacgccgccaccc
acgccgaccgcttcgttcgtcgccacgcgcaactacgaaaccgtcctcacgcccgaagcg
ctcgacaagtgggtcgcgaaggtcgagggcgcaccgctcgtgtgcttcgacaccgagacc
acgagcctcgatccgatgaccgccgagctcgtcggcctcgccctcagcgtggagccgggc
gaggcggcctacattccgctgcgccacacgtatccgggcgcgcccgaccagttgcccttt
gccgcgacgctcgcgcgcttcaagccctggctcgaggatgcgagccgcgcgaaggtcgcg
cagaacgccaagtacgactgccacgtgctcgccaatgaaggcgtccgtgtgcgtggcatc
gcacacgacacctgcatcgcgtcgtatgtcatcgacagctaccagcgccacgacatggat
gcactcgccatgcggcacctgggcgcgaagacgattcctttcgaggatgtcgctgggaag
ggcgcgaagcagatctccttcgcgcaggtcgccctcgacaaggcaaccgaatattcggcc
gaggatgccgacgtcacgctccagttgcagggcgtgctgggtccgaaggtcgccgccgat
cccaagctcgaccgcgtctacagcgaaatcgagatgcccgtctcgcgcgtgctcttcgcg
atggagcgcaacggcgtgctgatcgactcgcagctcctcgccaagcagacgcacgagctc
tccgagaagatgcttgccctcgagcaccgtgcctacgaggaggccgggcagccattcaac
ctcggcagccccaagcagctgggcgagatcctcttcgtgcagaagcagttgccggtgaag
aagaagacgccctcgggcgcgccttccaccgacgaggatgtcctcgagcaactcgcgctc
gatcatccgctgcccaagatcctgctcgagcatcgcgggctctcgaagctgaagagcacc
tacaccgacaagctgccgcgcatggtgaacgcgaagaccgggcgcgtgcacacgaactac
gggcagaccgtcgccgtcacgggccgcctgtcgtcgaccgatcccaacctgcagaacatt
cccgtgcgcaccgccgagggccggcgcattcgcgaggccttcatcgcgccgcccggatcg
aagatcgtctccgcggactactcgcagatcgagcttcggatcatggcgcacctctcgggc
gacaagagcctcatcgacgcgttcgggcgcggcgaggacattcaccgacacaccgcggcc
gaagtgttcggcgctgccacggccgatgtcacgagcgagcagcggcgctacgcgaaggtg
atcaacttcggcctcatctacggcatgagcgcgttcggtctcgcgggcaacctcggcatc
gagcgttcggccgcggcgagctacatggacaaatacttcgcgcgctatccgggtgtcgcg
cagtacatggagcgcacgcgagccgaggcgaaggaaaagggctacgtggagacggtgttc
ggccgccgcctgtggctacccgacatcaagagcgccaacgcgccacgccggcagggggcg
gagcgccaggcgatcaacgcgccgatgcagggcaccgcggccgatctcatcaagctcgcg
atgatcgccgtgcaaggctggctcgagcgcgagaagctcgccacgcgcctcgtgatgcag
gtgcacgacgagctcgtcctcgaagtgcccgacaccgaactctcgcgcgtcaagagcgaa
gtcgagaaactgatgatgggtgtcgcgaaactcgacgtgccgctcgtcgtggaagccggc
gtgggcgagaactgggagaaggcgcattga
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