Usitatibacter palustris: DSM104440_00506
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Entry
DSM104440_00506 CDS
T06995
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
upl
Usitatibacter palustris
Pathway
upl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
upl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DSM104440_00506 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
upl03019
]
DSM104440_00506 (rhlE)
Enzymes [BR:
upl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DSM104440_00506 (rhlE)
Messenger RNA biogenesis [BR:
upl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DSM104440_00506 (rhlE)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
P-loop_SecA
ResIII
AAA_22
GRP
Motif
Other DBs
NCBI-ProteinID:
QJR13716
UniProt:
A0A6M4H2I6
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All DBs
Position
complement(477347..478975)
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AA seq
542 aa
AA seq
DB search
MRRQVLRGPIFQEIAISTFESLGLLPELLRAIAEQGYTTPTPIQLQAIPIVLSGRDLLGA
AQTGTGKTAGFTLPLLQRLAPSASKSFSPAMHPVRCLILTPTRELAIQVFESVKTYGKHI
PLRPFCVYGGVNINPQIQELRRGVEILVATPGRLLDLIGQKAVDLRMVQILVLDEADRML
DMGFIPDIKRIIALLPRQRQNLLFSATFSDEIRRLSAQFLHDPATVEVARRNTAAESVTQ
YAYNVDGAKKRALLAHLVKAHDWSQVLVFCKTKHGANRLASQLVRDGINADAIHGNKAQN
ARIRALEGFKAGEIRVLVATDIAARGLDIEALPHVVNFDLPHVPEDYVHRIGRTGRAGLE
GEAISFVSGEERVLMEAVERLVKKKVERREVQGLSEIVAQSQEMHRDEKPPQRGEQRGGQ
RGGGKPRGEGQGRSQGQGRSQGQGRSQGQSARQEKQPPRSDKPPRNENQRRAEPRDRDEH
KGRSRPAQKPANGPASHHPPMDFSKPYEPAPDKEPATQQAGDAPPRRGPQAVVPALFRRK
PS
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
ttgcgaaggcaagtccttcgcgggccgatttttcaggagattgccatcagtactttcgaa
agcctcgggctgctgcccgagctgcttcgcgccatcgcggagcagggctacaccaccccc
acccccatccagctccaggccattcccatcgtcctttcgggacgcgacctgctcggcgcc
gcgcaaaccggcaccggcaagaccgcgggattcacgctgccgctgctgcagcgcctggcc
ccgagtgccagcaagagcttctcgccggcgatgcacccggtgcgctgcctcatcctcacg
cccacgcgcgagctcgcgatccaggtcttcgaaagcgtgaagacctatgggaagcacatc
ccgctgcggcccttctgcgtctacggcggcgtgaacatcaatccgcagatccaggagctg
cgccgcggcgtggaaatcctggtcgcgaccccgggccggttgctcgatctgatcggccag
aaggccgtggacctgcgcatggtgcagatcctcgtgctcgacgaagccgatcgcatgctc
gacatgggcttcatccccgacatcaagcgcatcatcgcgctgctgccgcgccagcggcag
aacctgctcttctcggcgacgttctccgacgaaatccgcaggctctccgcgcagttcctg
catgaccccgcgacggtcgaagtcgcgcgccgcaacaccgccgccgagtccgtgacgcag
tacgcgtacaacgtcgacggcgccaagaagcgcgcactcctcgcccacctcgtgaaggcc
cacgactggtcgcaggtgctcgtgttctgcaagaccaagcatggtgcgaaccgcctcgcg
agccagctcgtgagggacggcatcaacgccgacgcgatccacggcaacaaggcgcagaac
gcgcgcatccgtgcactcgaaggcttcaaggccggcgagatccgcgtgctggtcgccacc
gacatcgccgcgcgcggcctcgacatcgaggcgctgccgcacgtcgtgaacttcgacctg
ccgcatgtcccggaagattacgtccaccgcatcggccgcaccggccgcgcgggcctggaa
ggcgaggcgatctccttcgtgagcggcgaagaacgcgtgctcatggaagcggtcgagcgc
ctggtcaagaagaaggtcgagcgccgcgaagtgcaggggctctccgagatcgtcgcgcag
tcgcaggagatgcatcgcgacgagaagccgccgcagcgcggcgagcagcgtggcgggcaa
cgcggcggcggcaagccgcgcggcgaaggccagggccgctcgcagggccagggccgttcg
cagggacaaggacgttcgcagggccagtcggcgcgccaggagaagcaaccgccgcgttcg
gacaagccgccgcgcaacgagaaccagcgccgcgccgagccgcgcgatcgcgacgagcac
aagggccgctcgcgtcccgcgcagaagcctgcgaacgggcccgcctcgcaccatccgccc
atggacttctcgaagccctacgaaccggcgccggacaaggaacccgcaacgcagcaggca
ggcgacgctccgccgcgtcgtggtccgcaagctgtggtgcccgcgctgttccgccgcaaa
cccagctaa
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