Usitatibacter palustris: DSM104440_00701
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Entry
DSM104440_00701 CDS
T06995
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
upl
Usitatibacter palustris
Pathway
upl02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
upl00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
DSM104440_00701 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
upl03021
]
DSM104440_00701 (rpoD)
Transcription machinery [BR:
upl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DSM104440_00701 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SPO22
RBD_ZCCHC3_2nd
Dockerin_1
Motif
Other DBs
NCBI-ProteinID:
QJR13911
UniProt:
A0A6M4H2V9
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All DBs
Position
667673..669559
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AA seq
628 aa
AA seq
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MKKSSNEHHKVEVKLAEVEAQKKRLKNLIVLGKDRGYLTYAEINDHLPDDLTEAEQIEGV
VTMLADMGITVFDEAPDAEQLLMTESTPPVADETVLEEAEEALSLTVDSEFGRTTDPVRM
YMREMGSVELLTREGEIEIAKRIEDGLKHMIHAISSCPTTIEEILRLADLVERDEMRIDE
LVDGLVDPDEDEVVEEEIVEEEEEELEEEADADEDGDIASADLEQLKQDSLVHFNKIRRL
YKRMKKVLSEKGYRSRAYKDLQDSISTELLAIRFTAKQVEHLCNGLRHLVERVRSHEREI
MELCTRNSGMPRAHFIKTFPGNETNLKWVGEEIASGKVFAKALDRFRPAVIEQQDLLIAL
QKEVGIPIKDLKEIARQMSTGEAKARRAKREMIEANLRLVISIAKKYTNRGLQFLDLIQE
GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRIS
RQILQETGQEPDPATLAVKMEMPEEKIRKILKISKEPISMETPIGDDDDSHLGDFIEDQT
GLAPADSALYASLREATKDVLDSLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERI
RQIEAKALRKLRHPSRSEKLRSFLEGES
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
gtgaagaaatccagcaacgagcatcacaaggtcgaggtcaagctcgctgaggtggaagcg
cagaagaagcgcctgaagaacctcatcgtcctgggcaaggaccgcggttacctcacctac
gccgaaatcaacgaccacctgcccgacgacctgacggaagccgagcagatcgaaggcgtc
gtgacgatgctcgcggacatgggcatcaccgtgttcgacgaagcgccggatgccgagcag
ctcctcatgacggagtcgacgccccccgtggccgacgaaaccgtcctcgaggaagccgaa
gaagcgctgtccctcaccgtcgactccgaattcggccgcaccacggaccctgtgcgcatg
tacatgcgcgagatgggctcggtggagctgctcacgcgcgaaggcgaaatcgaaatcgcc
aagcggatcgaagacggcctgaagcacatgatccacgcgatctcgtcgtgcccgacgacg
atcgaggaaatccttcgcctggccgacctcgtcgaacgcgacgagatgcgcatcgacgag
ctcgtcgacggcctggtcgatcccgacgaggatgaagtcgtcgaggaagagatcgtcgag
gaagaagaggaagagctcgaggaagaagccgatgccgatgaggatggcgacatcgcgagc
gccgacctcgaacagctcaagcaggactcgctcgtccacttcaacaagatccgccgcctg
tacaagcggatgaagaaggtgctctccgagaagggctaccgttcgcgcgcgtacaaggac
ctccaggactcgatctccaccgagctgctggcgatccgcttcaccgcgaagcaggtcgag
catctctgcaacggtcttcgccacctcgtcgagcgcgtccgctcgcacgagcgcgagatc
atggagctttgcacgcgcaattccggcatgccgcgcgcgcacttcatcaagacgttcccg
ggcaacgagacgaacctcaagtgggtcggcgaagagatcgcctccggcaaggtgttcgcc
aaggcgctcgaccgcttccgtcccgcggtgatcgagcagcaggacctgctgatcgcgctg
cagaaggaagtcggcatcccgatcaaggacctgaaggaaatcgcgcgccagatgtcgacg
ggcgaagcgaaggcgcggcgtgcgaagcgcgaaatgatcgaggccaacctgcgcctcgtg
atctcgatcgcgaagaaatacacgaaccgcggcctgcagttcctggacctcatccaggaa
ggcaacatcggcctcatgaaggcggtcgacaagttcgaataccgccgcggctacaaattc
tccacgtacgcgacgtggtggatccgccaggccatcacgcggagcattgcagaccaagcc
cgcacgatccgcatcccggtgcacatgatcgagacgatcaacaagatgaaccgcatctcg
cggcagatcctgcaggagacgggccaggagcccgatcccgcgacgctcgccgtgaagatg
gaaatgccggaagagaagatccgcaagatcctcaagatctccaaggagcccatctccatg
gagacgccgatcggcgacgacgacgattcgcatcttggcgacttcatcgaagaccagacc
ggcctcgcgcccgcggattccgcgctctacgcgagcctgcgcgaagcgaccaaggacgtt
ctcgattcgctcacgccgcgcgaagcgaaggtgctgcgcatgcgcttcggcatcgagatg
aacacggaccacacgctcgaggaagtcggcaagcagttcgacgtcactcgcgagcgcatc
cggcagatagaggcgaaagcgctgcgcaagctccggcacccgtcgcgctccgagaagctg
cgaagcttcctcgaaggcgagtcctaa
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