Usitatibacter palustris: DSM104440_01212
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Entry
DSM104440_01212 CDS
T06995
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
upl
Usitatibacter palustris
Pathway
upl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
upl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DSM104440_01212 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
upl03400
]
DSM104440_01212 (mfd)
Enzymes [BR:
upl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DSM104440_01212 (mfd)
DNA repair and recombination proteins [BR:
upl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DSM104440_01212 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
MFD_D3
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
AAA_30
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QJR14416
UniProt:
A0A6M4H4F4
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Position
complement(1198192..1201530)
Genome browser
AA seq
1112 aa
AA seq
DB search
MSADALWLARHARERRPLLVLAASAADAERLREETAWFDPRLRVHRLPDWEILPYEEFSP
HPDLISERLATLWQMQGGSFDVVIVPVATALQRLPPRSYLAGRTFHLRQKDRLDLAALRG
QLVLAGYAHVQQVMSPGEFCVRGGLVDLFPSGSAVPYRIDLVGEEIESIKTFDVDTQRSI
YPVGEVRLLPAREFPLDEEGRARFRENFRERFEGDPSRSRAYKDVSSGLAPAGVECYLPL
FFSGTETIFDYVPKDTRFVIHGELAGSAESFWKDLKSRYELLRGDRDRPLLEPRDLYLPV
EDLFIALKEFERKDYSPEISGARALPRLEVDRRSVEPLKRLREFLSKYSGRVLISAEGAG
RRETLMQLLAEHDVHPVLIESWDAFLAATHPLAIAFGPVTSGFERTDQPIAIVTEAELYP
GQVRQARRRDARAKSSAEGMLRDLVEVKEGDPVVHSQHGIARYRGLVTMDLGEGPTEFLY
LEYEGGDKLYVPVSQLHVISRYTGASPDSAPLHRLGSGAWEKARRKAAQQVRDTAAELLD
LYAKRTARKGFQFPLAGKDFEAFNAGFEFEETPDQAAAIEAVVLDMTSGKPMDRLVCGDV
GFGKTEVAMRAAFVAVAAGKQVAILVPTTLLAEQHFENFSDRFANFPVKIAEFSRFRSAK
EIAAGVEGLASGGVDIAIGTHKLIQKDVKFKDLGLVIIDEEHRFGVRQKEQLKQLRSEVD
VLTLTATPIPRTLALSLEGLRDFSVIATAPQRRLAIKTIVNRETAGIVREAVMRELKRGG
QAYYLHNEVETIENRREELEKLLPEARIAVAHGQMRERDLEGVMRDFYHQRANVLLCSTI
IETGIDVPTSNTIIIHRADRFGLAQLHQLRGRVGRSHHQAYAYLLTPPEEALSANAKKRL
EAIQMMEELGAGFYLAMHDLEIRGAGEVLGESQSGGIHDVGFALYTEMLESAVRSLKAGK
EPDLSKPFAVATEVNLHAPALLPTTYCGDVNERLVIYKRLANGSTAEDIERLTEELVDRF
GPLPDPTRVLLECHRLRIQGAPLGVAKIDASPAAIVVQFVPQPPIDARKVLALVQSSRLY
TLPGPDRVRIAPSHEDLKARANEVRRFLGRLA
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
ttgagcgctgacgcactctggctcgcgcgccatgcgcgcgagcgccggccgctgctcgtg
ctggccgcgtcggccgccgatgccgagcgcctgcgcgaggaaaccgcctggttcgatccg
cggctccgggtgcaccgactgcccgactgggaaatcctgccctacgaggaattctccccg
cacccggacctcatctcggagcggctcgcgacgctctggcagatgcagggtggctccttc
gacgtcgtgatcgtgccggtcgccaccgcgttgcagcgtctcccccctcgctcgtacctc
gcgggccgcacgttccacctgcgccagaaggatcgcctcgatctcgccgcgctgcgcggg
caactcgtgctcgccggctacgcgcacgtgcagcaggtgatgagccccggcgagttctgc
gttcgtggcggtctcgtcgatctcttcccctcaggcagcgccgttccctaccggatcgac
ctcgtcggcgaagagatcgaatcgatcaagaccttcgacgtcgatacgcaacgctcgatc
tacccggtgggcgaagtccgcttgctgccggcgcgcgagttcccgctcgacgaagagggc
cgtgcgcgcttccgcgagaatttccgtgagcgcttcgaaggcgatccgtcgcgatcgcgt
gcctacaaggacgtctccagcggcctcgcgcccgcgggcgtggagtgctacctgccgctc
ttcttcagcggcaccgaaacgatcttcgactatgtcccgaaggacacgcgcttcgtgatc
cacggcgagctcgccggcagcgcggagtcgttctggaaggatctcaagtcgcgctacgag
ctgctgcgtggcgaccgcgaccggccgctgctcgagccgagggacctctacctgccggtc
gaggatctcttcatcgccctgaaggaattcgaacgcaaggactattcgcccgagatctcg
ggcgcgcgcgccttgccgaggctggaagtcgatcggcgctcggtggagccgttgaagcgc
ctgcgcgaattcctgtcgaagtactcggggcgcgtcctcatttccgccgagggcgcgggc
cggcgcgagaccctaatgcagctcttggctgagcacgacgtccatcccgtactcatcgaa
agctgggacgcattcctcgccgccacgcatccgcttgcgatcgcattcggtccggtcacc
agtggcttcgagcgcacggaccagccgatcgccatcgtcacggaagccgagctctacccg
gggcaggtacgccaggcgcgccgccgcgatgcgcgcgcgaagtcgagcgcggaaggcatg
ctgcgcgacctcgtcgaggtcaaggaaggcgatcccgtcgtccacagccagcacggtatc
gctcgctatcgcggcctcgtgacgatggatctcggcgagggcccgaccgaattcctgtat
ctcgagtacgaaggcggcgacaagctttacgtgccggtctcgcaactgcatgtgatcagc
cgctacaccggcgcgtccccggattcggcgccgctgcaccggctcggaagcggtgcgtgg
gagaaagcgcggcgcaaggcggcgcagcaggtgcgcgataccgccgccgagctcctcgac
ttgtatgcgaagcgcacagcgcgcaagggcttccagttcccgctcgcgggaaaggacttc
gaggccttcaacgcgggcttcgaattcgaggagacgcccgaccaggcggcggcgatcgag
gccgtggttctcgacatgacctcgggcaagcccatggatcggctggtctgcggcgacgtg
ggcttcggcaagaccgaagtggcgatgcgcgcggcgttcgtcgcggtcgccgcgggcaag
caggtcgcgatcctcgttccgacgacgctgctcgccgaacagcacttcgagaatttcagc
gaccgcttcgccaacttccccgtgaagatcgccgagttctcgcgcttccggagcgcgaag
gaaatcgccgccggcgtcgagggactggcgagcggtggtgtcgacatcgcgatcggcacg
cacaagctcatccagaaggacgtgaagttcaaggacctggggctcgtgatcatcgacgag
gagcatcgcttcggcgtacgccagaaggaacagttgaagcaactgcgctccgaggtcgat
gtcctcacgctcaccgcgacacccattccgcgcaccctcgccctctccctcgagggcctg
cgcgatttttcggtgatcgccacggcgccgcagcggcgcctcgccatcaagaccatcgtc
aatcgcgagaccgcgggcatcgtgcgcgaggccgtgatgcgcgagctgaagcgcggcggc
caggcgtactacctgcacaacgaagtcgagacgatcgagaaccgccgcgaggagctcgag
aagctgctgcccgaagcgcgcattgccgtcgcgcacggccagatgcgcgagcgcgacctc
gagggcgtgatgcgcgacttctaccaccagcgcgcgaacgtgctgctgtgctccacgatc
atcgagaccggcatcgacgtgccgacgtccaacacgatcatcatccatcgcgccgatcgc
ttcggtctcgcgcagctgcaccagttgcgcgggcgcgtcggccgctcgcaccaccaggcc
tacgcgtacctgctcacgccacccgaagaggcgctgagcgccaacgcgaagaagcgcctc
gaagcgatccagatgatggaagagctcggcgcgggcttctacctcgcgatgcacgacctc
gagatccgcggcgccggtgaagtgctgggtgaatcgcaatcgggtggcatccacgatgtc
ggcttcgcgctctacaccgagatgctcgaatcggccgtgcgctcgctcaaggccggcaag
gagcccgacctctcgaagcccttcgccgtcgccaccgaggtcaacctgcacgcaccggca
ttgctcccgacgacctattgcggcgacgtgaacgagcgcctcgtgatctacaagcgcctc
gcgaatggctccacggctgaagacatcgagcgcctcaccgaggagctggtcgatcgcttc
ggtccactgcccgatcccacgcgcgtgctgctcgaatgccatcgcctgcgcatccagggc
gcgccccttggcgtcgcgaagatcgatgcgagccccgcggcgatcgtcgtgcagttcgtg
ccgcagccgccgatcgatgcgcgcaaggtcctcgcactggtgcaatcgagccgcctctat
acactccccgggccggaccgcgtgcgcatcgcgccgtcccatgaagacctcaaggcccgc
gcgaacgaagtccggcgcttcctgggaaggctcgcatga
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