Usitatibacter palustris: DSM104440_02038
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Entry
DSM104440_02038 CDS
T06995
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
upl
Usitatibacter palustris
Pathway
upl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
upl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DSM104440_02038 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
upl03019
]
DSM104440_02038 (rne)
03009 Ribosome biogenesis [BR:
upl03009
]
DSM104440_02038 (rne)
Enzymes [BR:
upl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
DSM104440_02038 (rne)
Messenger RNA biogenesis [BR:
upl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DSM104440_02038 (rne)
Ribosome biogenesis [BR:
upl03009
]
Prokaryotic type
rRNA processing factors
DSM104440_02038 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QJR15221
UniProt:
A0A6M4H6G1
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All DBs
Position
2092163..2094985
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AA seq
940 aa
AA seq
DB search
MKRMLFNATQAEELRVAIVDGQKLIDLDIETLGREQRKSNIYKGVITRVEPSLEAVFVDY
GAERHGFLPFKEIAKQFMTNDDGEFGRSKMATHLKVGHEMIVQVDKDERGNKGAALTTYI
SLAGRYLVLMPNNPRGGGVSRRIEGEDRNELREVMDQLEVVEGMSLIARTAGIGRSLEEM
QWDLNYLIQLWTAIEKAANEEKGPCLIYLESSLVVRAIRDLFQPDIGEILVDTAAIYEQA
LSFMSTVMPANVNKVKLYKDDVPLFSRFQIEHQIESAYRRDVTLPSGGAIVIDHTEALVS
VDVNSARATRGHDIEQTAFNTNCEAADEVARQLRLRDLGGLIVIDFIDMESAKNQREVEN
RLRDALKHDRARVQIGKISRFGLLELSRQRLQPSLEETTHTPCPRCHGTGFIRDTASTAL
HVLRILQEEAMKEGTAAIHAQVPVDVATYLLNEKRSEIFKIETRLKVNLLLIPNQHLETP
NYTVERLRHDSPLLDAQTPSYEMATVPTEDEDDKLPSRQDAKPARPEPLVKGITPDQPAP
ITPTSLPIQQPVAKAPAPASAEGGLLDRLFGWFRKPAEAPAPVAPVATATRERPPREGGG
QDGRRGGNGQRRDGRRGEGRGGEGRSEGGRGGQGRNRQERGGRDQRPPEQRGEQAEGAPR
EDRPPRPPREPREPREGREPREGREQREPREQREPREAREPREQREPREPRQPRPEQPRP
AQQADGSPRLESHPVAETVGGEGEGEGRRRRRGRGGRGGGDRGENREIRDNRDNRDSTAP
AVVQEEQHPHEDAPTPQFASAELFAAEEQQAPMTPSPSPFPPPATDTLQPSPAPLHVASS
VGMPMPAPRVVVDQLEDVEPQRPVRRRRTEAQLAAQAAAEALQLVETSGNAPVVAAPVVE
DELPRRTKPRRRRSVEVGSEPLQLVETAPGTEKQPETPGN
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgttcaatgcgacccaggctgaagagctccgggttgcaatcgtcgat
ggccagaagctcatcgacctcgacatcgagaccctcggaagagagcaacgcaagagcaac
atctacaagggcgtcatcacccgcgtagaaccctccctcgaagcggtctttgtcgattac
ggcgccgagcgccacggcttcctcccgttcaaggagatcgccaagcagttcatgaccaac
gacgacggcgaattcggccgctcgaagatggccacccacctcaaggtgggccacgaaatg
atcgtgcaggtggacaaggacgagcgcggcaacaaaggcgcggccctgaccacctatatc
tcgctcgccggccgctacctggtcctgatgcccaacaacccgcgcggtggcggagtctcg
cgccgcatcgagggcgaggaccgcaacgagctgcgcgaagtgatggaccagctcgaagtc
gtcgaaggcatgagcctgatcgcccgcaccgcgggcatcggccgttccctcgaagagatg
cagtgggacttgaactacctcatccagctgtggaccgcgatcgagaaggccgcgaacgaa
gaaaaaggcccctgcctgatctacctcgagtcgagcctggtggtccgcgccatccgcgac
ctcttccagcccgacatcggcgaaatcctcgtcgacaccgcggcgatctacgagcaggcc
ctgtcgttcatgagcacggtgatgccggccaacgtgaacaaggtgaagctctacaaggac
gacgttcccctcttctcgcgcttccagatcgagcaccagatcgaaagcgcgtatcgccgc
gacgtgacgctgccctcgggcggcgcgatcgtcatcgaccacacggaagccctcgtgtcc
gtggacgtgaacagcgcccgcgcgacccgcggccacgacatcgagcagaccgcgttcaac
acgaactgcgaagccgccgatgaagtggcgcgccagctccgcctgcgcgacctcggtggc
ctgatcgtcatcgacttcatcgacatggaaagcgcgaagaaccagcgcgaggtggaaaac
cgcctgcgcgacgcgctcaagcacgaccgcgcccgcgtgcagatcggcaagatctcgcgc
ttcggcctgctcgagctctcgcgccagcgcctgcagccttcgctggaagagaccacgcac
acgccctgcccgcgctgccatggcacgggcttcatccgcgacaccgcctccaccgcactt
cacgtcctgcgcatccttcaggaagaagcgatgaaggaaggcacggccgcgatccacgcg
caggtgccggtggacgtcgcgacgtacctgttgaacgagaagcgcagcgagatcttcaag
atcgagacgcgcctcaaggtgaacctgctgctgatccccaaccagcacctcgagaccccg
aactacaccgtcgagcgcctgcgccacgattcgccgctgctcgatgcgcagacccccagc
tacgagatggcgaccgtgccgaccgaggacgaggacgacaagttgccctcgcgccaggac
gccaagcccgcgcgacccgaaccgctggtgaagggcatcacgcccgaccagccggctccg
atcacgccgacctcgctgccgatccagcaaccggtcgccaaggcgccggctccggccagc
gcggaaggtggcttgctcgatcgcctgttcgggtggttccgcaaacccgccgaagcccct
gcgccggtcgcccccgtggcaaccgcaacgcgggagcgtcctccgcgtgaaggcggtggc
caggacggccgccgtggcggcaacggacagcgccgcgacggacgtcgtggcgaaggccgc
ggcggtgaaggtcgcagcgaaggtggccgtggtggccagggccgcaatcgacaggagcgc
gggggtcgcgatcaacgtcctcccgagcagcgtggcgaacaagcagaaggagcgccgcgc
gaagaccgtccgccgcgtcctccgcgcgagccgcgtgaacctcgcgagggtcgtgagccg
cgtgagggtcgcgaacaacgcgagccgcgtgaacagcgtgagccgcgcgaagcccgcgag
ccgcgtgagcaacgcgagccgcgcgaaccgcgccagccccgtccggagcaaccgcgcccg
gcccagcaggccgatggttcgccgcgcctcgagtcgcaccccgttgccgagaccgtcggt
ggcgaaggtgaaggcgaaggtcgccgtcgccgtcgtggccgtggcggccggggtggtgga
gatcgcggcgagaaccgtgaaatccgcgacaaccgcgacaatcgcgacagcaccgcgccc
gccgtcgtgcaggaagagcagcacccgcacgaagatgccccgacgccgcaattcgcttcc
gcggaattgtttgccgccgaagagcagcaggctccgatgacgccgtcgccttcgccgttc
ccgccgccggcaacggacacgctgcagccctcacccgcgccgctccacgtggcctcctcg
gtgggaatgccgatgcccgcgccgcgcgtggtcgtcgaccagctcgaggatgtggaaccg
caacgccccgttcgccgccgccgcaccgaggcgcagctggcagcccaagccgccgccgaa
gcactgcaactggttgaaaccagtggcaacgctccggtggtcgccgcgcccgtcgtcgag
gacgagcttccgcgacgcacgaagccgcgccggcgccgttcggtcgaggtgggtagcgag
ccgctgcaactcgtcgagaccgcacccgggaccgaaaagcaaccggagacgccggggaac
tga
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